BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0030.p (282 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 347 7e-97 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 328 3e-91 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 326 1e-90 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 326 1e-90 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 322 2e-89 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 347 bits (889), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 198/259 (76%), Positives = 225/259 (86%) Query: 1 MNGSLRNIVGNVRQGTNTIAVASAEISTGNHDLSARTEQQASALEETASAMEELISTVRQ 60 MN SLR IV NVR GT+TI+ AS+EI+ GN DLS+RTEQQAS+L ETASAMEELISTVRQ Sbjct: 256 MNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQ 315 Query: 61 NADNADTASRLASEASGIAVEGGEVVTRVVATMSAINSSSRKIVDIISVIDGIAFQTNIL 120 NADNA AS+LA+ AS +A +GG VV++VV TM AIN+SSRKIVDIISVIDGIAFQTNIL Sbjct: 316 NADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNIL 375 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDDSVKTVGDGGVLVEQA 180 ALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI+DSV V DG LVEQA Sbjct: 376 ALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQA 435 Query: 181 GATMERVVGSVRKVAEIVGEISLASREQSSGIEQVNLAISQMDEMTQQNAALVEQAAAAA 240 G TM+ VV SVR+V +IV EIS AS EQ+ GIEQ+NLAI+QMD++TQQNAALVE+AAAAA Sbjct: 436 GNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAA 495 Query: 241 ASMQSQAASLAQLVSVFSL 259 ASMQ+QA L Q+VSVF L Sbjct: 496 ASMQTQAGRLMQMVSVFRL 514 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 328 bits (841), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 199/284 (70%), Positives = 230/284 (80%), Gaps = 8/284 (2%) Query: 1 MNGSLRNIVGNVRQGTNTIAVASAEISTGNHDLSARTEQQASALEETASAMEELISTVRQ 60 M G+L IVG VR GT+ IA AS EI+TGN DLSARTE+QA ALEETASAMEEL STV Q Sbjct: 259 MTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEETASAMEELTSTVSQ 318 Query: 61 NADNADTASRLASEASGIAVEGGEVVTRVVATMSAINSSSRKIVDIISVIDGIAFQTNIL 120 NADNA A++LA+ AS +A +GGEVV++V++TM +IN SSRKIVDIISVIDGIAFQTNIL Sbjct: 319 NADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDIISVIDGIAFQTNIL 378 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDDSVKTVGDGGVLVEQA 180 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV VG G LV +A Sbjct: 379 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSVAKVGSGSELVTRA 438 Query: 181 GATMERVVGSVRKVAEIVGEISLASREQSSGIEQVNLAISQMDEMTQQNAALVEQAAAAA 240 G+TM+ VV SVR+VA+IV EIS AS EQS GI QVNLAI+ MD+ TQQNAALVE+AAAAA Sbjct: 439 GSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQQNAALVEEAAAAA 498 Query: 241 ASMQSQAASLAQLVSVFSL------DHGSRTAASLSAPSPLPAL 278 +MQ QAA L+++VS F L + R+A ++ PLPAL Sbjct: 499 EAMQEQAARLSEVVSQFKLLGQDQIAYAPRSAVDIT--PPLPAL 540 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 326 bits (836), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 192/267 (71%), Positives = 219/267 (82%) Query: 1 MNGSLRNIVGNVRQGTNTIAVASAEISTGNHDLSARTEQQASALEETASAMEELISTVRQ 60 MNG+L +IVG VR GT TI AS EI+TGN DLSARTE QA +LEETASAME+L STV+Q Sbjct: 253 MNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQ 312 Query: 61 NADNADTASRLASEASGIAVEGGEVVTRVVATMSAINSSSRKIVDIISVIDGIAFQTNIL 120 NADNA A+ LA+ AS +A +GG VV +VVATM AI++SS+KI DII VIDGIAFQTNIL Sbjct: 313 NADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNIL 372 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDDSVKTVGDGGVLVEQA 180 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV+ V DG LV +A Sbjct: 373 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARA 432 Query: 181 GATMERVVGSVRKVAEIVGEISLASREQSSGIEQVNLAISQMDEMTQQNAALVEQAAAAA 240 G TM+ VV SV +V +V EI+LAS+EQS GIEQVNLAI+ +DE TQQNAALVEQAAAAA Sbjct: 433 GDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAA 492 Query: 241 ASMQSQAASLAQLVSVFSLDHGSRTAA 267 SMQ QAASL VSVF L+ ++ A Sbjct: 493 RSMQDQAASLTDAVSVFRLEDDAQVLA 519 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 326 bits (836), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 193/271 (71%), Positives = 218/271 (80%), Gaps = 3/271 (1%) Query: 1 MNGSLRNIVGNVRQGTNTIAVASAEISTGNHDLSARTEQQASALEETASAMEELISTVRQ 60 MN +L IV VR+GT +I AS EI++GN DLSARTEQQA +LEETASAMEE+ STVRQ Sbjct: 258 MNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQ 317 Query: 61 NADNADTASRLASEASGIAVEGGEVVTRVVATMSAINSSSRKIVDIISVIDGIAFQTNIL 120 NADNA A+++A AS IA++GG++V RVV TM IN SSRKIVDII VIDGIAFQTNIL Sbjct: 318 NADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNIL 377 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDDSVKTVGDGGVLVEQA 180 ALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI DSV V G LV QA Sbjct: 378 ALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQA 437 Query: 181 GATMERVVGSVRKVAEIVGEISLASREQSSGIEQVNLAISQMDEMTQQNAALVEQAAAAA 240 GATME+VV SVR V +IV EIS AS EQSSGIE++N A++QMDE TQQNAALVEQAAAAA Sbjct: 438 GATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAA 497 Query: 241 ASMQSQAASLAQLVSVFSLDHGSRTAASLSA 271 SMQ QA L Q +S+F L+ G AAS+ A Sbjct: 498 KSMQEQAVRLTQSISIFKLEQG---AASIPA 525 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 322 bits (826), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 189/259 (72%), Positives = 215/259 (83%) Query: 1 MNGSLRNIVGNVRQGTNTIAVASAEISTGNHDLSARTEQQASALEETASAMEELISTVRQ 60 MN SL IV VRQG++TI ASAEI+TGN DLS+RTE+QA ALEETASAMEEL STV+Q Sbjct: 255 MNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETASAMEELTSTVKQ 314 Query: 61 NADNADTASRLASEASGIAVEGGEVVTRVVATMSAINSSSRKIVDIISVIDGIAFQTNIL 120 NADNA A+ LA+ AS +AV+GG VV +VV TM IN +SRKIVDIISVIDGIAFQTNIL Sbjct: 315 NADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVIDGIAFQTNIL 374 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDDSVKTVGDGGVLVEQA 180 ALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIDDSV V +G LVEQA Sbjct: 375 ALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNGSRLVEQA 434 Query: 181 GATMERVVGSVRKVAEIVGEISLASREQSSGIEQVNLAISQMDEMTQQNAALVEQAAAAA 240 G TM VV SVR+V ++V EIS AS EQS GIEQ+N AI+QMD++TQQNAALVE+AAAAA Sbjct: 435 GTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALVEEAAAAA 494 Query: 241 ASMQSQAASLAQLVSVFSL 259 S+Q Q+ L+ VSVF L Sbjct: 495 QSLQEQSTRLSATVSVFKL 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.308 0.120 0.294 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 510,496 Number of extensions: 15485 Number of successful extensions: 446 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 71 Length of query: 282 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 198 Effective length of database: 1,222,130 Effective search space: 241981740 Effective search space used: 241981740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 130 (54.7 bits)