BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0028.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra...   105   8e-25
gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra...    61   2e-11
gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra...    59   7e-11

>gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 536

 Score =  105 bits (262), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 76/109 (69%)

Query: 1   LKTYFIDEAKASTANSTRLQKEIGELLSSEEEKSLYQNIGERRKVYLASHYRILDLKSAG 60
           L  YF  E  AS+ +S   QK++  LLS+ EEK+L+Q IGE RK+YL+S   I   K+AG
Sbjct: 81  LGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKLYLSSRDEINKAKAAG 140

Query: 61  NIEEGNRLLDQEFVPLAKSYQDSMLKLLELEQRDIDKTTQQIDDIAAGS 109
           N EE  R+LDQ FVP A +YQD+M KL++ +++++D T ++ID IAA S
Sbjct: 141 NTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAIAAKS 189


>gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 515

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 62/109 (56%)

Query: 1   LKTYFIDEAKASTANSTRLQKEIGELLSSEEEKSLYQNIGERRKVYLASHYRILDLKSAG 60
           L+ +   EA AS+  S +  K++ +LL+SEEEK ++  I   RK +L    +I   K  G
Sbjct: 79  LEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVARKQFLTIRDQIYAAKKQG 138

Query: 61  NIEEGNRLLDQEFVPLAKSYQDSMLKLLELEQRDIDKTTQQIDDIAAGS 109
           +  +   L  +++V +AKS QD+M  LL+ E+  ID+ + QI   A+ S
Sbjct: 139 DAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQQDASSS 187


>gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 533

 Score = 59.3 bits (142), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%)

Query: 1   LKTYFIDEAKASTANSTRLQKEIGELLSSEEEKSLYQNIGERRKVYLASHYRILDLKSAG 60
            + YF  +  A +A  ++LQKE+   ++  EEK L+  +G+ R  Y A+   I D+K+AG
Sbjct: 78  FQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRAAYRATRQSIFDVKTAG 137

Query: 61  NIEEGNRLLDQEFVPLAKSYQDSMLKLLELEQRDIDKTTQQID 103
           +      + D   V +   Y D +L+  + +++ ID+T   I+
Sbjct: 138 DDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.129    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 214,816
Number of extensions: 5989
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 124 (52.4 bits)