BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0019.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...   300   7e-83
gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...    77   1e-15

>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  300 bits (768), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 144/219 (65%), Positives = 177/219 (80%), Gaps = 1/219 (0%)

Query: 33  AQMVGTVTNLSGVLTARHPDGSTRIMSSKSEVLQGDTLITQSNTYARVKFMDNSEIVLRP 92
           AQ+VG VT+LSGVLTARH DG+  ++S KS +LQGDTLIT+  TY RVKF+DN+EIVLRP
Sbjct: 36  AQVVGQVTHLSGVLTARHADGTRAVLSVKSAILQGDTLITERETYTRVKFVDNAEIVLRP 95

Query: 93  GSEMVVKSFLYDAEKPERNNVAIGLVKGGLRAVTGLIGKRNHDAVSFDTPTATIGIRGTH 152
           G+E+ V  ++YD +KPE ++VAIGLVKGGLRAVTGL+GKRNH+AV+FDTPTATIGIRGTH
Sbjct: 96  GTEVAVNKYIYDEKKPENDSVAIGLVKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTH 155

Query: 153 FGALFCQNDCGGVPTSSGSTPANGLHVDVAQGAIVLSNPAGQQVFQAGQFGYVSNLNTPP 212
           FGALFCQ DCGG+PT SG  PA+GLHVDVA GAI++SN  G Q+F AGQFGYVS    PP
Sbjct: 156 FGALFCQADCGGIPTPSGQAPADGLHVDVASGAILVSNAGGAQLFNAGQFGYVSGPLQPP 215

Query: 213 VILPPAQGIPVTMPLSISKNA-PGSKSVDASKSVSCMVQ 250
           V++P   G+PVTMP +IS N   G + + A+ +  C+V 
Sbjct: 216 VVVPANIGVPVTMPPAISSNTNNGMQKLGAASAPDCVVH 254


>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 50  HPDGSTRIMSSKSEVLQGDTLITQSNTYARVKFMDNSEIVLRPGSEMVVKSFLYDAEKPE 109
             +G TR ++    + +GD ++T + +       D++ I L P S+ +++ F+++ EK +
Sbjct: 57  QREGKTRPLAVGERLYEGDRVLTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFN-EKTD 115

Query: 110 RNNVAIGLVKGGLRAVTGLIGKRNHDAVSFDTPTATIGIRGTHF 153
             N+A+ +VKG LR V+GLIGK   +   F TPTATIGIRGT F
Sbjct: 116 EGNIAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRGTDF 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 725,079
Number of extensions: 27349
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)