BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0018.p
         (1098 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her...   154   3e-38

>gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1422

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 156/261 (59%), Gaps = 15/261 (5%)

Query: 25  ARGAPGLGGFVETSGKKTLDVVKAPDVGTGGEWLIDPYDLTVVATGTNGVSNS-GN---V 80
           A GAPG GGFVETSG K LDVVKAP +G GG WLIDP DL VV+ G+  VS S GN    
Sbjct: 358 ATGAPGQGGFVETSGLKRLDVVKAPTLGAGGTWLIDPSDLEVVSGGSRTVSTSTGNGSYA 417

Query: 81  ITSTAAGSTIEAGTIVTQLNQGNSVSLTTGAGGAANGGNITVNAAINKTSGSAASLTLNA 140
           I++  + S I A TIV QL  G +V+L TGA G +  GNITV++AI K +G AASLTLNA
Sbjct: 418 ISANGSSSQIGADTIVGQLEAGVNVTLATGADG-SQAGNITVSSAIVKQAGGAASLTLNA 476

Query: 141 NNSIAINAGITSTSGTLNLNLNSNL-SGIAGDHAVQV---NNALIQINGGELNVRDGSST 196
            N+I+INA I STSG L L L++    G+    A Q    N A I +NGG+L   DG   
Sbjct: 477 ANNISINADIRSTSGALTLTLHTGAGEGVDFSAARQSTIGNGARISLNGGDLYAMDGVE- 535

Query: 197 GISNGNLFINNGGGIDLGTGGTLNAGNLNVTNGGNLL-GGFTSSVHLQGTLNNSGTVNFS 255
               GNL I+N G + L    TL AG L +  GG+L+     SSV L   L N+GT+  +
Sbjct: 536 --GRGNLLISN-GSVWLDGTSTLRAGRLQLDGGGSLVYASGNSSVTLNDALINNGTIQVN 592

Query: 256 NAAITVGD-KIINNGQFTTAN 275
            +     D  + NNG  + A+
Sbjct: 593 ASGRLYSDGGVYNNGNLSLAD 613


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,775,400
Number of extensions: 112648
Number of successful extensions: 549
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 11
Length of query: 1098
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 1003
Effective length of database: 1,170,045
Effective search space: 1173555135
Effective search space used: 1173555135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 136 (57.0 bits)