BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0017.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her...   306   1e-84
gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer...   107   8e-25

>gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1422

 Score =  306 bits (785), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 196/259 (75%)

Query: 19  IELMPASFTMRVGNRRLTMSWRPRKPVPQLLTGLLRRSWRAMFGKSLRMSVTAAAICAAW 78
           IEL+P S T+RVG RRLT+SWR RKP+PQLL GLLRRSW  +   +LR+SV  AA+C AW
Sbjct: 16  IELLPPSLTVRVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAPALRISVATAAVCGAW 75

Query: 79  NVPALAAAPGVNTLPTGGVITAGTATIAQNGNTLNINQSSSAAIGSFTSFSIGANAVVDI 138
             P LAAAP   TLPTG  +  G  T  QNGN LNINQ S  AI  F SFSIGA+A V++
Sbjct: 76  QAPVLAAAPAPGTLPTGWSVVNGNVTFIQNGNILNINQLSPQAIAQFLSFSIGADATVNV 135

Query: 139 SQTSASNAFLARVTGADPSQIYGLLKSNGTVVLVNQNGLMVGPGGVVDVARFIGSTLNIS 198
           +Q SA+ A LA+V+G D SQIYG L + GTVVL N NG+++GP G +D  RFI ++L IS
Sbjct: 136 NQPSAAAALLAKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAIS 195

Query: 199 DSDFLAGRLTFVNGGHAGNVDNQGVIKSATGGSVYLIGANVTNNGIIHSPNGEVLLAAGQ 258
           DSDFLAG+L F   G+AG VDNQG I+SATGGSVYLIG++V+N+GII S  GEV+LAAG+
Sbjct: 196 DSDFLAGKLNFARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGE 255

Query: 259 TVQLVDTATPGVTVCVTGA 277
           TV L DTATPGVTV VTG+
Sbjct: 256 TVTLADTATPGVTVNVTGS 274


>gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1568

 Score =  107 bits (268), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 111/201 (55%), Gaps = 9/201 (4%)

Query: 62  GKSLRMSVTAAAICAAWNVPALAAAPGVNTLPTGGVITAGTATIAQNGNTLNINQSSSAA 121
           GK     V AAA+  +   P LA A      P GG +TAG  +I+Q+GNT  I QSS   
Sbjct: 33  GKRANRKVIAAALLVS---PLLAQAA-----PVGGQVTAGAGSISQSGNTTTITQSSQNL 84

Query: 122 IGSFTSFSIGANAVVDISQTSASNAFLARVTGADPSQIYGLLKSNGTVVLVNQNGLMVGP 181
             ++ SF+  ++  V+  Q SAS   + R+   +P++ +G L +NG V L+N NG++ G 
Sbjct: 85  SVNWQSFNTASHETVNFIQPSASAIAVNRIYDTNPTRFFGQLNANGQVYLINPNGVLFGA 144

Query: 182 GGVVDVARFIGSTLNISDSDFLAGRLTFVNGGHAGNVDNQGVIKSATGGSVYLIGANVTN 241
           G  V+V   + STL++SD+   A    F +G   G++ NQG I  A GG V  IG  V+N
Sbjct: 145 GSQVNVGGLVASTLDMSDASLAAAARNF-SGSGTGSIINQGDISVANGGYVAFIGNTVSN 203

Query: 242 NGIIHSPNGEVLLAAGQTVQL 262
            G I +P G V LAAG  V L
Sbjct: 204 QGNITAPAGTVALAAGNDVTL 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,028
Number of extensions: 32316
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)