BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0014.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirill...   255   3e-69

>gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirillum
           seropedicae SmR1]
          Length = 757

 Score =  255 bits (652), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 151/187 (80%), Gaps = 4/187 (2%)

Query: 1   MRIAKVETDPRIVIVDIDEKSIAEVGRWPWSRDVVAALISKMTDSYEAQTVAFDVLFAEP 60
           MR+A+ + DPRIVIVDIDEKSIAE+GRWPWSRDV+A L+ +MT +Y+AQ+V FDV+FAEP
Sbjct: 51  MRVAQPDLDPRIVIVDIDEKSIAELGRWPWSRDVIAQLVRQMTQTYQAQSVGFDVVFAEP 110

Query: 61  DNSSGYATLESLAHSELKGLPQFGQQLQTLKPKLDFDARMAAAIQGRPVVMGYNLSNEPD 120
           D SSGY  L  LA   LK +PQF +QLQ LKP++D+DAR+A A++G+PVVMGYNLSNE  
Sbjct: 111 DTSSGYGRLAQLADGPLKDVPQFARQLQALKPQMDYDARLAEALRGQPVVMGYNLSNEAG 170

Query: 121 AIAKGQLPKPVFTLASLGGRRLDATNWKAYGANLPQLQEAAEAGGFFNPXADR----RAV 176
           AIAKGQLP P F++A LGGR LD T+W+AYGANLPQLQ AA AGGFFNP  D     RAV
Sbjct: 171 AIAKGQLPPPAFSVADLGGRALDVTHWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRAV 230

Query: 177 YLQSRLG 183
            L +++G
Sbjct: 231 PLMAQVG 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 936,414
Number of extensions: 36929
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)