BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0007.p (177 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore rece... 99 2e-22 gi|300309869|ref|YP_003773961.1| TonB-dependent ferric sideropho... 96 1e-21 gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore rece... 94 8e-21 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 80 8e-17 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 54 8e-09 >gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 7/183 (3%) Query: 2 LTGAVFRLEKTLQYVN-----SGRFTVQGGMQRHTGLELTANGRLGKQLSLVAGLAYLQT 56 LT AVFR K +Y +G VQ G Q +TG+EL ANG+L +L++ A L+ Sbjct: 541 LTAAVFRTRKAYEYQKPDNSPTGFTYVQQGQQTNTGVELGANGKLTPRLAIGAAATVLRA 600 Query: 57 KADNPADPNVAGKQIADVPKLQGNLFLDYRVPGVDGLSVNGGMYYVGRRPLNTQNTTWMG 116 +A + +Q+ +VP+L+ ++ DY VPG++G++V G Y +P + + Sbjct: 601 RASDTGTARFDDQQVVNVPRLRTAVYADYAVPGMEGVNVMGSWNYSASKPATRDGSVNLP 660 Query: 117 GYTRFDTGARYATRIGGYKTVFGLTVQNLLDKRYWAAGDADINGAWA--GKPRTLFISAQ 174 F+ G RY R+ G+ + NL DKRYW + + G PRT +S Q Sbjct: 661 AVHVFNAGLRYQLRVNGHAATLRANIDNLFDKRYWKDAGQYLGDGYVHLGAPRTARLSLQ 720 Query: 175 VDM 177 D Sbjct: 721 YDF 723 >gi|300309869|ref|YP_003773961.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 92/179 (51%), Gaps = 8/179 (4%) Query: 3 TGAVFRLEK---TLQYVNSGRFTVQGGMQRHTGLELTANGRLGKQLSLVAGLAYLQTKAD 59 T AVF++E+ + V S F Q G R GLEL+A G + L L+A + +T+ Sbjct: 551 TAAVFQIERANSSTAVVGSQTFATQDGRARVRGLELSAYGEAQRGLRLMASGTFFETRQS 610 Query: 60 NPADPNVAGKQIADVPKLQGNLFLDYRVPGVDGLSVNGGMYYVGRRPLNTQNTTWMGGYT 119 + GK+I VPK NL D+ P + GL++N + G + NT + G+T Sbjct: 611 HTVGGTNDGKEIGAVPKHNFNLGADWDTPWLQGLALNTRIINTGASWYSDANTVKVPGWT 670 Query: 120 RFDTGARYATRIGGYKTVFGLTVQNLLDKRYWAAGDADING-AWAGKPRTLFISAQVDM 177 R D GARY +R+GG + ++NL DK YW NG A G RTL +SAQVD Sbjct: 671 RMDLGARYTSRLGGQTITYRANLENLFDKHYWIMQ----NGYAGYGAGRTLVLSAQVDF 725 >gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 733 Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 3/177 (1%) Query: 2 LTGAVFRLEKTLQYVNS-GRFTVQGGMQRHTGLELTANGRLGKQLSLVAGLAYLQTKADN 60 L A F ++ L Y ++ G QR+ G+ELTA G + K + L++GL +L K Sbjct: 555 LGAAFFTTDRPLSYKDAVTNIEATNGKQRNRGVELTAYGEVTKGVRLLSGLTFLDAKQVQ 614 Query: 61 PADPNVAGKQIADVPKLQGNLFLDYRVPGVDGLSVNGGMYYVGRRPLNTQNTTWMGGYTR 120 GK VP++Q N L+ VPGV GL++NG Y + ++ N + + R Sbjct: 615 TNSSANNGKYAIGVPRVQANAGLEVDVPGVRGLTLNGRATYTSTQYVDAANQLEVPSWVR 674 Query: 121 FDTGARYATRIGGYKTVFGLTVQNLLDKRYWAAGDADINGAW--AGKPRTLFISAQV 175 +D GARY T IGG+ ++ N+ ++ YW + N + AG PRT S V Sbjct: 675 YDLGARYLTDIGGHAVTLRASIDNVANRNYWQSAGGASNSGYLVAGNPRTFSTSVSV 731 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 80.5 bits (197), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 26 GMQRHTGLELTANGRLGKQLSLVAGLAYLQTKADNPADPNVAGKQIADVPKLQGNLFLDY 85 G QR+ GLEL+A G L + L L+A + Q + A+ G+ VP NL LD+ Sbjct: 642 GRQRNRGLELSAYGELMRGLRLLASATFYQARLLRTANGLNDGRTAPGVPLRAANLSLDW 701 Query: 86 RVPGVDGLSVNGGMYYVGRRPLNTQNTTWMGGYTRFDTGARYATRIGGYKTVFGLTVQNL 145 G+ GL+ +G M + G + NT + +TR+D G RY +R+G V+ L V+NL Sbjct: 702 EPAGLPGLAFSGRMIHTGPVYYDAANTLRLPSWTRWDLGVRYRSRLGERPVVWRLNVENL 761 Query: 146 LDKRYWAAGDADINGAWAGKPRTLFISAQVD 176 + W + A PRT+ +S QVD Sbjct: 762 FNHSTWLLDKPYVTVA---APRTVLLSMQVD 789 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 53.9 bits (128), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 8/157 (5%) Query: 21 FTVQGGMQRHTGLELTANGRLGKQLSLVAGLAYLQTKADNPADPNVAGKQIADVPKLQGN 80 F+V G R G+EL A G L L++ A Y Q A P + GK VP+ + Sbjct: 678 FSVSNGQVRSRGVELEAKGELLPGLNVTAAYTYAQVVNTQNAAPELIGKTPILVPRQAAS 737 Query: 81 LFLDYRVPGVD--GLSVNGGMYYVGRRPLNTQNTTWMGGYTRFDTGARYATRIGGYKTVF 138 L+LDY V D G+ V G Y GR NT D RI + Sbjct: 738 LWLDYTVQRGDLAGMGVGAGARYTGRNYATAANTVENAAQVILDA----MVRIDRGPWRY 793 Query: 139 GLTVQNLLDKRYWAA-GDADINGAWAGKPRTLFISAQ 174 V NL +++Y + + + WA + RT +SA+ Sbjct: 794 AFNVSNLANRQYTSCLAEPTLTCFWAPE-RTAVLSAR 829 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 625,013 Number of extensions: 27438 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 11 Length of query: 177 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 98 Effective length of database: 1,245,805 Effective search space: 122088890 Effective search space used: 122088890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)