BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0003.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pum...    71   1e-13

>gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 21/273 (7%)

Query: 36  DAAVVARTADYLFAAAPGILPLLWFQALRNFTVGLRRPGPLLAITLTAVAVNAALNYVLT 95
              +V +   YL   A  +   L+F+        + RP  ++AI +  + +   LN +L 
Sbjct: 118 SPELVEKATLYLRIEALALPATLFFRVYSALNTAIARPKMVMAIQVCGLLLKLPLNALLI 177

Query: 96  VGAFGIAGMGLAGIAWSSTLVSLFSFFVFLLIVRRDPTLRRL------LSVRIWKTGRQA 149
            G  G+   G  G A ++TL++        L+V R P  R L           WKT R+ 
Sbjct: 178 FGGLGLPAFGGPGCAIATTLIAWLMMLAAWLLVARLPVYRPLKLFGRGFVAPSWKTLRRL 237

Query: 150 LWRTWKMGLPVAATYGSEAGFFAAIALLVGALGTDALAAHTVVNQAVYIVFMISVGLSHA 209
           LW    +G+P+  +Y  E   F  +A+ +  LG   +A H +      +++M+ + ++ A
Sbjct: 238 LW----LGIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQITANVGTVLYMLPLSIASA 293

Query: 210 TSICISRTWAQDDIATSRRYGYTGLGMGIACMVLIGVIYWATPQWVLGVFLHKPDAGADA 269
           TS  +++     + A +++ G  G+ + IA  VL+G++ +     ++  +   P      
Sbjct: 294 TSTLVAQAIGGGNFAVAKKIGNAGIRLAIALSVLVGLVVYCLRGQIIRAYTPDP------ 347

Query: 270 VRLIAG---KLLLLAAVLQVFDCAQNIGIGILR 299
             LI G    L L  A  Q+FD  Q     +LR
Sbjct: 348 --LIIGAALPLFLYIAFYQLFDSLQVTTAFVLR 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,148,122
Number of extensions: 48023
Number of successful extensions: 227
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)