BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0002.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311932|ref|YP_003776024.1| acetyltransferase [Herbaspirill...    69   2e-13

>gi|300311932|ref|YP_003776024.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 146

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 8/124 (6%)

Query: 32  LRQQVFVIEQRC-LYPDADGFDPACLHGLGYDDAGALMAYARILPPGVRYAEPSIGRVIV 90
           +R  VFV EQ+     + D  D  C+H + YD+AG  +A  R+LP G       IGR+ V
Sbjct: 23  IRFDVFVDEQQVPAEIELDEMDAHCIHAVAYDEAGQPLATGRLLPDG------HIGRMAV 76

Query: 91  AGQLRGKGIGEVLMRQALLHAAALYPGAPVRISAQARLERFYRRLGFASVGELYDDVGIP 150
               RGKG+G  ++ QAL+ AA       V ++AQ     FY   GF   GE++ + GI 
Sbjct: 77  RKAGRGKGVGGAVL-QALMQAARARGDREVVLNAQTHAAPFYAAHGFVQEGEIFLEAGIE 135

Query: 151 HIDM 154
           HI M
Sbjct: 136 HITM 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.144    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,665
Number of extensions: 27088
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)