BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0244.0006.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate tran...   104   3e-24
gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease, d...    79   2e-16

>gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate
           transport system dctQ-M fusion permease large permease
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  104 bits (259), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 33  EMKKRGSKPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSITALFIGGLMP 85
           EMKKRGSKPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSITALFIGGLMP
Sbjct: 328 EMKKRGSKPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSITALFIGGLMP 380



 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 56/64 (87%), Gaps = 2/64 (3%)

Query: 73  VSITALFIGGLMPAPPFGVGFYAACAIGKVSPDKVFNRVWGYLAALVVALLVVAAVPWIS 132
           V I A+ IG  + APPFGVGFYAACAIGKVSPD VFNRVWGYLAALVVALLVVA VPWIS
Sbjct: 566 VVILAMGIG--LFAPPFGVGFYAACAIGKVSPDGVFNRVWGYLAALVVALLVVAFVPWIS 623

Query: 133 IGFL 136
           IGFL
Sbjct: 624 IGFL 627


>gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease,
           dicarboxylate transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 618

 Score = 78.6 bits (192), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 40/51 (78%)

Query: 86  APPFGVGFYAACAIGKVSPDKVFNRVWGYLAALVVALLVVAAVPWISIGFL 136
           APPFG+G+YAAC IG+V PD    R+W YL ALVV LL+VA VPW SIGFL
Sbjct: 568 APPFGLGYYAACTIGRVHPDVAVKRIWPYLGALVVGLLIVAFVPWFSIGFL 618



 Score = 77.4 bits (189), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 33  EMKKRGSKPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSITALFIGGLMP 85
           EMK+RG+   EL++LL++SGAM ETIPPSLVLITIG+V  VSI ALF GG+MP
Sbjct: 323 EMKRRGNHEGELISLLAASGAMAETIPPSLVLITIGSVAGVSIAALFTGGIMP 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 384,534
Number of extensions: 12849
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 4
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)