BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0244.0004.p
         (67 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein...   105   6e-25
gi|300309917|ref|YP_003774009.1| short chain dehydrogenase/reduc...    52   7e-09

>gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein)
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  105 bits (263), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 60/67 (89%)

Query: 1   VDTPLTQAVHSPETRKSFTAGVPMHRYGSTDEIAAAVSFLAAEDSSYVTGHVVPVDGGFV 60
           VDTP+TQA+HS +TR+S+   VPM RYG+TDEIA+AV +LAAE+S+Y+TGHV+PVDGGFV
Sbjct: 190 VDTPMTQAMHSEQTRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVIPVDGGFV 249

Query: 61  AAGILDI 67
           A G+L+I
Sbjct: 250 AGGVLEI 256


>gi|300309917|ref|YP_003774009.1| short chain
           dehydrogenase/reductase family protein [Herbaspirillum
           seropedicae SmR1]
          Length = 241

 Score = 52.4 bits (124), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1   VDTPLTQAVHSPETRKS-FTAGVPMHRYGSTDEIAAAVSFLAAEDSSYVTGHVVPVDGGF 59
           + TPLTQA+     R     A  P+ R+G  +++   V+FL +  +S++TG +VPVDGG+
Sbjct: 179 IATPLTQALQDDPVRAGPILARTPLGRWGQPEDVGQVVAFLCSPAASFMTGAIVPVDGGY 238

Query: 60  VAA 62
           + A
Sbjct: 239 LVA 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 228,739
Number of extensions: 7590
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 67
Length of database: 1,619,870
Length adjustment: 39
Effective length of query: 28
Effective length of database: 1,435,205
Effective search space: 40185740
Effective search space used: 40185740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)