BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0002.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 476 e-136 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 183 2e-47 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 179 2e-46 gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 149 2e-37 gi|300309864|ref|YP_003773956.1| LysR family transcription regul... 147 1e-36 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 476 bits (1226), Expect = e-136, Method: Compositional matrix adjust. Identities = 232/298 (77%), Positives = 256/298 (85%), Gaps = 7/298 (2%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGVQLFDRSKRSVQLTE 60 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELG QLFDRSKR++QLT Sbjct: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 Query: 61 AGKHFYR-------ALERARRNAVSTGAGKSGALLVGFMMSTAYNILPSVTRHYSAAYPE 113 AGK+FYR ALERA+RN S+ GKSGAL VGFMMSTAYNILPSVTRHYSAAYPE Sbjct: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 Query: 114 VDMRLTEHVPNLLAVDIREGKRDVGLMYRPEDCGGLDSRTIFSEPLVAVLPKNHRLATRE 173 VDMRLTE+VPNLLA DI + K DVG+MYRPEDC LDS TI++EPL+AVLP++HRLA R+ Sbjct: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQ 180 Query: 174 KISARDLADDPFVSIPRAIAPVVYDLIVNCCLAAGFRPRIKLEANLQQTIVNLVGEGLGV 233 ISA +LA+D F+SIPR IAPVVYDLI C GFRPRI LE NLQQTIVNLVGEGLGV Sbjct: 181 SISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 Query: 234 AMVPNSMQAMHLDTTVFKPLVDAPVVEVAVIWNKDNRNPCIQTFVQTAEEVWTALRRG 291 A+VP SMQAMHLDTTVFKPL+ AP+VEVAVIWNKDN NPCI+TF +TA EVW ++ G Sbjct: 241 ALVPTSMQAMHLDTTVFKPLIGAPMVEVAVIWNKDNTNPCIRTFAETAVEVWGRMQPG 298 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/293 (37%), Positives = 167/293 (56%), Gaps = 12/293 (4%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGVQLFDRSKRSVQLTEA 61 +ELR L YF VAE +HFGRAA LH++QPPL++ IAALE+ LG LF R+KRSV LT A Sbjct: 7 LELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRSVALTAA 66 Query: 62 GKHFYRALERARRNAVS-------TGAGKSGALLVGFMMSTAYNILPSVTRHYSAAYPEV 114 G +R + A + +G SG L + F+ S Y+ILP + + + A YP+V Sbjct: 67 GAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFRAHYPQV 126 Query: 115 DMRLTEHVPNLLAVDIREGKRDVGLMYRP---EDCGGLDSRTIFSEPLVAVLPKNHRLAT 171 + L E ++ D+ +GK D GL+ P + L+ R + SEPL+A LP+ + Sbjct: 127 QIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPEGA-VRK 185 Query: 172 REKISARDLADDPFVSIPRAIAPVVYDLIVNCCLAAGFRPRIKLEANLQQTIVNLVGEGL 231 R +S + L + P + PR IAP +D I++C AG P I EA QTIV LV G+ Sbjct: 186 RGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAGM 245 Query: 232 GVAMVPNSMQAMHLDTTVFKPLVD-APVVEVAVIWNKDNRNPCIQTFVQTAEE 283 G+A+VP S+ + ++ L D AP ++ ++ W +D+ + ++ ++ +E Sbjct: 246 GMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDSPSSVLRALLELLDE 298 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/283 (37%), Positives = 144/283 (50%), Gaps = 18/283 (6%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGVQLFDRSKRSVQLTEA 61 +ELRHL YF VA TL F RAAELLHI+QPPL+RQI LE+ LGV+L DR+ R + LT A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 62 GKHFYRA-------LERARRNAVSTGAGKSGALLVGFMMSTAYNILPSVTRHYSAAYPEV 114 GK FY LE+ G+ +GF+ S Y +LP + + + PE+ Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 115 DMRLTEHVPNLLAVDIREGKRDVGLMYRPEDCGGLDSRTIFSEPLVAVLPKNHRLATREK 174 ++ +E V ++ G+ DVG P + TI EPLVAV P H L R K Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARNK 180 Query: 175 ISARDLADDPFVSIPRAIAPVVYDLIVNCCLAAGFRPRIKLEANLQQTIVNLVGEGLGVA 234 ++ LA F+ P P D +++ + RP I EAN QT + LV G+GV Sbjct: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 Query: 235 MVPNSMQAMHLDTTVFKPLVDAPVVEVAVIWNKDNRNPCIQTF 277 +VP S+Q +H V++PL NK +P I F Sbjct: 241 LVPRSVQGLHRSDVVYRPL-----------SNKGVHSPVIMNF 272 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/268 (36%), Positives = 145/268 (54%), Gaps = 12/268 (4%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGVQLFDRSKRSVQLTEA 61 I+LR L YF VAE H +AAE + I QPPL++QI LE+ELGV LF+R R ++LT++ Sbjct: 19 IDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTDS 78 Query: 62 GKHFY---RALERARRNAVST----GAGKSGALLVGFMMSTAYN-ILPSVTRHYSAAYPE 113 G RAL V++ GK G + VGF S + + + SV R + A P+ Sbjct: 79 GAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPD 138 Query: 114 VDMRLTEHVPNLLAVDIREGKRDVGLMYRP-EDCGGLDSRTIFSEPLVAVLPKNHRL--- 169 V M + E N L +R + D+ + P D GGL T+ E +VA LP +H L Sbjct: 139 VAMTVEESNTNELIEALRGKRLDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVDG 198 Query: 170 ATREKISARDLADDPFVSIPRAIAPVVYDLIVNCCLAAGFRPRIKLEANLQQTIVNLVGE 229 R+ I+ LA++ F+ R P +YD I+ C AAGF P++ EA + ++LV Sbjct: 199 GKRKSIALHALAEESFIMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAA 258 Query: 230 GLGVAMVPNSMQAMHLDTTVFKPLVDAP 257 G+GV ++P SM ++ + V+ L AP Sbjct: 259 GVGVTVIPASMTRVNAEGVVYLKLTGAP 286 >gi|300309864|ref|YP_003773956.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 141/285 (49%), Gaps = 8/285 (2%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGVQLFDRSKRSVQLTE 60 M++L + F A L+F RAA LL+++QPPL+RQI LE LGVQLF+R R+V+LT Sbjct: 1 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 60 Query: 61 AGKHFY----RAL---ERARRNAVSTGAGKSGALLVGFMMSTAYNILPSVTRHYSAAYPE 113 G+ F R L E+A GK+G + VGF + Y ++P + + PE Sbjct: 61 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPE 120 Query: 114 VDMRLTEHVPNLLAVDIREGKRDVGLMYRPEDCGGLDSRTIFSEPLVAVLPKNHRLATRE 173 +D+ L E + D+G + L+ + + E LV +P+ H LA + Sbjct: 121 IDVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYD 180 Query: 174 KISARDLADDPFVSIPRAIAPVVYDLIVNCCLAAGFRPRIKLEANLQQTIVNLVGEGLGV 233 +I+ L PF+ Y+ I+ AA +P + TI++LV GLGV Sbjct: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 Query: 234 AMVPNSMQAMHLDTTVFKPLVD-APVVEVAVIWNKDNRNPCIQTF 277 ++P S Q H D F+PL D AP E+++ W D NP + F Sbjct: 241 GILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAF 285 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 916,672 Number of extensions: 38563 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 47 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)