BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0243.0001.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312657|ref|YP_003776749.1| NADP-dependent malic enzyme oxi...   261   4e-71
gi|300310478|ref|YP_003774570.1| NADP-dependent malic enzyme oxi...   202   5e-53

>gi|300312657|ref|YP_003776749.1| NADP-dependent malic enzyme
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 770

 Score =  261 bits (668), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/205 (62%), Positives = 155/205 (75%)

Query: 148 DGMICGTVGAYHDHLRYVDQVIGKKAGAHTYAAMNILLLDQRTVALVDTHVNDDPSAEQI 207
           DGMICGT G    HL Y+DQV+GK+ G + YAAMN ++L  R + +VDTHVN++P+A ++
Sbjct: 562 DGMICGTYGTTQLHLHYIDQVLGKREGVNVYAAMNAVILPNRQLVMVDTHVNENPNAREL 621

Query: 208 AEFTIAAAEEMTWLNLVPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMH 267
           AE T+ AAEEM    L P+AALLS SNFGS++S S  KMR AL I+ E AP LEVDGEMH
Sbjct: 622 AEITMLAAEEMRRFGLHPRAALLSHSNFGSSNSESARKMREALAILREIAPELEVDGEMH 681

Query: 268 GDCALDEALRLQILPTSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVNA 327
           GD ALD  L   ++P S LKG ANLLV PN+DA NIAYNLLKTA+G+ VA+GP LLG   
Sbjct: 682 GDTALDSKLLNAVIPDSPLKGDANLLVMPNIDAANIAYNLLKTASGNGVAIGPILLGCAK 741

Query: 328 PVHILTSSSTVRRIINMAALTVLDA 352
           PVHILT S+TVRRIINM AL V+DA
Sbjct: 742 PVHILTPSATVRRIINMTALCVMDA 766



 Score =  178 bits (451), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 118/140 (84%)

Query: 1   VSAAFINGLKVVKKNINEVKVVVSGAGAAALGCLELMMDLGLPLENIWVTDIEGVVYEGR 60
           V AA +NGLKVV K+I  VK+VVSGAGAAAL CL+L++DLG P+ENI+VTD+ GVVY+GR
Sbjct: 180 VGAAILNGLKVVGKDIKNVKLVVSGAGAAALACLDLIVDLGFPIENIYVTDLAGVVYKGR 239

Query: 61  PTLMDPDKQRYARKTDLRTLAQVIEGADVFLGVSAGNVLKKEMVASMAARPLILALANPT 120
             LMDPDK+R+AR+T+ RTLA+VI  AD+FLG+SA  VLK EMV  MAARPL+LALANPT
Sbjct: 240 KELMDPDKERFARETEARTLAEVIPDADIFLGLSAAGVLKPEMVKQMAARPLVLALANPT 299

Query: 121 PEILPEVALSVRDDIVMATG 140
           PEILPE   +VRDD ++ATG
Sbjct: 300 PEILPEEVKAVRDDAIIATG 319


>gi|300310478|ref|YP_003774570.1| NADP-dependent malic enzyme
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  202 bits (513), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 135/207 (65%), Gaps = 1/207 (0%)

Query: 148 DGMICGTVGAYHDHLRYVDQVIGKKAGAHTYAAMNILLLDQRTVALVDTHVNDDPSAEQI 207
           D M+CG  G Y  HL +V++VIG K GA  +AA+N +LL  +T+ + DT+VND P AEQ+
Sbjct: 546 DAMLCGLDGNYDGHLAHVEKVIGLKQGAQEFAALNAVLLPDQTLFITDTYVNDTPDAEQL 605

Query: 208 AEFTIAAAEEMTWLNLVPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMH 267
           A    AAAEE+    + PK A LS SN GS+S  S  KM  A +   + AP +E  GE+H
Sbjct: 606 ARIAQAAAEEVARFGVPPKVAFLSHSNRGSSSRPSARKMAAAHEAFKKLAPEVESAGELH 665

Query: 268 GDCALDEALRLQI-LPTSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVN 326
           GD AL E +R    L  S L G+AN+LVCPN+DA NI +N+LKT++G    +GP LLG  
Sbjct: 666 GDAALSEKIRNNAGLADSGLTGAANVLVCPNLDAANILFNVLKTSSGQGTTIGPILLGAA 725

Query: 327 APVHILTSSSTVRRIINMAALTVLDAN 353
           APVH+LT SSTVRR+INM AL    A 
Sbjct: 726 APVHVLTPSSTVRRVINMTALAAAKAQ 752



 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 109/139 (78%)

Query: 2   SAAFINGLKVVKKNINEVKVVVSGAGAAALGCLELMMDLGLPLENIWVTDIEGVVYEGRP 61
           SAA +NGL++V K+I +VK+ VSGAGAAA+ C+E+M+ LG+  EN+++ D +GV+YEGRP
Sbjct: 178 SAALLNGLELVGKDIGKVKIAVSGAGAAAIACVEVMIGLGVKRENVYMVDSKGVIYEGRP 237

Query: 62  TLMDPDKQRYARKTDLRTLAQVIEGADVFLGVSAGNVLKKEMVASMAARPLILALANPTP 121
             +D  KQRYA KT+ RTLA V+ GADVFLG SA  VL  EMV +MA +P+ILALANP P
Sbjct: 238 GGLDASKQRYAIKTEARTLADVVNGADVFLGCSAPGVLSAEMVKTMADKPIILALANPEP 297

Query: 122 EILPEVALSVRDDIVMATG 140
           EI PE+A SVR D ++ATG
Sbjct: 298 EIRPELAKSVRPDCIIATG 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 964,193
Number of extensions: 37485
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)