BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0242.0007.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   210   9e-56
gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   201   7e-53

>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score =  210 bits (535), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 152/235 (64%), Gaps = 3/235 (1%)

Query: 1   VLAILGDDHGCVSSSMPHQSEQALIAWGMPVVNPANIQEYMEFGPYGWALSRFSGAWVGF 60
           VL I GDDH   SS+  HQSE  L A G+PV+ P+++QEY+++G +GWA+SR++G WV  
Sbjct: 150 VLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYTGLWVAM 209

Query: 61  KAISETVEGGAVVEL-PPLPQYTAPTGYTPPADGLHNRWPDLPGLALEQR-VDDKLKAVQ 118
           K +++ VE G  V + P   Q   P  +  P DGL+ R PD   L  E R ++ K  A  
Sbjct: 210 KCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTV-LGQEARMINYKWYAAL 268

Query: 119 AFAGVNSIDKLIVPAPHARIGIISAGKAYLDLLEALARLGLSQQQLEDLGVRLYKPGLTY 178
           A+A  N ++++I  +P ARIGII+AGK+YLD  +AL  LG+ +Q   D+G+RLYK G+T+
Sbjct: 269 AYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAARDIGIRLYKVGMTW 328

Query: 179 PLERTRLSAFAAGLDEILVVEEKGAVIEQQLKNLFYNLPQERRPSVIGKTDAHGE 233
           PLE   +  FA GLDEILVVEEK  ++E QLK   YN   + RP V+GK D  GE
Sbjct: 329 PLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKFDDTGE 383


>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  201 bits (510), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 6/239 (2%)

Query: 1   VLAILGDDHGCVSSSMPHQSEQALIAWGMPVVNPANIQEYMEFGPYGWALSRFSGAWVGF 60
           VL + GDDHG  SS++PHQS+    A  +P++ P N+QEY++ G +GWA+SR+SG  VGF
Sbjct: 151 VLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHGWAMSRYSGCVVGF 210

Query: 61  KAISETVEGGAVVELPPLP-QYTAPTGYTPPADGLHNRWP-DLPGLALEQR----VDDKL 114
           KA+++TVE  A V+  P   Q   P+ +  P  GL+ R   D  G+   ++     D K+
Sbjct: 211 KALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDTLGVQARKQEALMQDYKI 270

Query: 115 KAVQAFAGVNSIDKLIVPAPHARIGIISAGKAYLDLLEALARLGLSQQQLEDLGVRLYKP 174
            A  A+A  N ++++++ +P AR+GII++GK+YLD+LEAL+ LG+ +    ++G+RL+K 
Sbjct: 271 YAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSELGIDEAFAAEIGLRLFKV 330

Query: 175 GLTYPLERTRLSAFAAGLDEILVVEEKGAVIEQQLKNLFYNLPQERRPSVIGKTDAHGE 233
            + +PLE   +  FA GLDEILVVEEK  ++E QLK   YN   + RP VIGK D  GE
Sbjct: 331 SMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGE 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 950,034
Number of extensions: 40470
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)