BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0242.0001.p
         (80 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t...    73   4e-15
gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t...    55   9e-10

>gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC
          transporter ATP-binding protein/permease
          [Herbaspirillum seropedicae SmR1]
          Length = 596

 Score = 73.2 bits (178), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 42/47 (89%)

Query: 2  LVLALPFLSVPPFWITLLSYVGLYSIVALGLVMLTGVAGLTSFGCLA 48
          +VLALP L +PPFW+TLLSYVGLY+IVALGLV+LTGVAGL SFG  A
Sbjct: 18 IVLALPQLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAA 64


>gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC
          transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 597

 Score = 55.5 bits (132), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 6  LPFLSVPPFWITLLSYVGLYSIVALGLVMLTGVAGLTSFG 45
           P L  P FW+   +Y+GLY++VA+GLV+LTG+ G+TSFG
Sbjct: 19 FPLLPTPQFWVIQANYIGLYALVAIGLVLLTGIGGMTSFG 58


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.145    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 256,474
Number of extensions: 8467
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 80
Length of database: 1,619,870
Length adjustment: 51
Effective length of query: 29
Effective length of database: 1,378,385
Effective search space: 39973165
Effective search space used: 39973165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 123 (52.0 bits)