BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0053.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294...   115   2e-27
gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot...    96   2e-21

>gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294
           [Herbaspirillum seropedicae SmR1]
          Length = 532

 Score =  115 bits (288), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 1   LPQSFATALHWLDRAARQGVPDAWTLIGEHIPYEVVAQAPRPLEYVLWYERAFDAGRKLA 60
           LPQS +TA HWL+RAARQ + DAW LI EHIPYEVV    RP E   WYERAF+ G   A
Sbjct: 35  LPQSLSTAFHWLERAARQELADAWMLIAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKA 94

Query: 61  GLAFARLVLAHQAQPEAQAMLGKAVKALESEANAGTAEAQWLLAQQ 106
           GLAFARLVL    +P A+ +  +A++ L+  A  G  +AQWLLA+Q
Sbjct: 95  GLAFARLVLESAGEPGAE-LKARAIRVLQVVAREGDPDAQWLLARQ 139


>gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score = 95.5 bits (236), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 1   LPQSFATALHWLDRAARQGVPDAWTLIGEHIPYEVVAQAPRPLEYVLWYERAFDAGRKLA 60
           LP+S  TA +WL RAA+QGV DAW +IG +I YE V +   P E  +WYE+AF+AG   A
Sbjct: 35  LPRSKGTAFYWLRRAAQQGVDDAWMIIGRNITYEQVKELSPPREAAVWYEKAFEAGVPQA 94

Query: 61  GLAFARLVLAHQAQPEAQAMLGKAVKALESEANAGTAEAQWLLAQQ 106
           GL FARLVL + ++ ++     +A+ AL   A+    EAQWLLAQQ
Sbjct: 95  GLIFARLVLDNTSEFDSNTH-ARAIAALSLLASRDDHEAQWLLAQQ 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 461,564
Number of extensions: 16213
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)