BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0050.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313582|ref|YP_003777674.1| site-specific integrase/recombi...   144   2e-36
gi|300310183|ref|YP_003774275.1| site specific integrase/recombi...    69   5e-14

>gi|300313582|ref|YP_003777674.1| site-specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  144 bits (362), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 77/82 (93%)

Query: 1   VAQLRLKAHGQALGLATNVHPHVLRHSFASHVLQGSGDLRAVQEMLGHASISATQVYTSL 60
           VAQLRLKAHG+AL +A++VHPH+LRHSFASHVLQ SGDLRAVQEMLGHASI+ATQVYT+L
Sbjct: 249 VAQLRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTAL 308

Query: 61  DFQRLAQVYDAAHPRAKKVTGK 82
           DFQRLAQVYD AHPRA+K  GK
Sbjct: 309 DFQRLAQVYDQAHPRARKNGGK 330


>gi|300310183|ref|YP_003774275.1| site specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 69.3 bits (168), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 6   LKAHGQALGLATNVHPHVLRHSFASHVLQGSGDLRAVQEMLGHASISATQVYTSLDFQRL 65
           +K +    G+   + PH LRH+FA+H+L    DLR VQ +LGHA IS TQ+YT +  +RL
Sbjct: 237 IKKYALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERL 296

Query: 66  AQVYDAAHPR 75
            Q++ A HPR
Sbjct: 297 KQLHAAHHPR 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 239,240
Number of extensions: 7203
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)