BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0046.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313584|ref|YP_003777676.1| HAD superfamily hydrolase [Herb...   315   2e-87

>gi|300313584|ref|YP_003777676.1| HAD superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  315 bits (806), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/240 (65%), Positives = 193/240 (80%), Gaps = 4/240 (1%)

Query: 2   SSQPLWLFDLDNTLHNASHAIFPAINANMNLFMERVLKEQGLPADQDAVNAMRQRYWRLY 61
           ++ PLWLFDLDNTLHNASHAIFPAINANMN  ++RVL++ GLP+D+ AVN MR+ YW+LY
Sbjct: 4   NTTPLWLFDLDNTLHNASHAIFPAINANMNRIIQRVLEKDGLPSDEAAVNHMRRHYWKLY 63

Query: 62  GATLLGMVQHHQVRPEDFLRDAHDFDDLFGMIRAERGLLNLLERLPGRKILLTNAPLRYS 121
           GATLLG+V+HH V  ++FL +AH FDDL GM+RAERG+   L RLPG+KILLTNAP RYS
Sbjct: 64  GATLLGLVRHHGVGVDEFLHEAHLFDDLTGMVRAERGIGRWLARLPGQKILLTNAPRRYS 123

Query: 122 RDVVRHLGLHRHFDKHISIESMRVHGKLKPKPSRQMLQQLLARERVPAHRCILVEDTVVN 181
           R++VRHLGLHRHF  HI+IESM VH +L+PKPSR ML++LLAR +    RCILVEDTV N
Sbjct: 124 RELVRHLGLHRHFSHHIAIESMHVHRQLRPKPSRLMLRKLLARHKATPRRCILVEDTVDN 183

Query: 182 LKSAKELGMRTAWITQYLAGNPH-FSPAGVRRMQTMHPTYVDVKVRSVRQLAAHLRRLAG 240
           LK+A+ELG+RTAW+TQYL G+       G +R+ +  P +VDVKVRSVRQL    RRLA 
Sbjct: 184 LKTARELGVRTAWVTQYLRGSQALLGHIGGQRVLSRRPAFVDVKVRSVRQLP---RRLAA 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 789,745
Number of extensions: 32693
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)