BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0042.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300...    78   2e-16

>gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300
          [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score = 77.8 bits (190), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 1  VTFSWLFCL-YLPAANAVDTPPRTPRAEHRGALFKVQDAHHTLYLFGTIHVGAASFYPLE 59
          V+ +WL CL +L  A A +T   T  A  RGAL++V D  HTL LFGTIHVGA  FYPLE
Sbjct: 7  VSLTWLSCLNWLSPAQAAET---TTEAPPRGALYEVSDGRHTLLLFGTIHVGAPDFYPLE 63

Query: 60 PRVMQALEQAPAIALEIDPNKTPAMQAA 87
          PR+ QAL  AP +ALE+DP    AMQ A
Sbjct: 64 PRLRQALAAAPVLALELDPQNAAAMQEA 91


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 423,171
Number of extensions: 16320
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 124 (52.4 bits)