BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0041.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300...   191   4e-50

>gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  191 bits (485), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 132/216 (61%)

Query: 1   MQAAVLRYGFYPEGQSYQTDLSPQLQQQVQAALKKYDVPAEAVTRFRPWMIASLLTVQEF 60
           MQ A  R+G YP GQ     L+P L+Q+  A L++  +P + V   RPWM+A  LTVQE+
Sbjct: 88  MQEAAQRHGLYPPGQHLLDQLAPPLRQRTMATLQRLGLPEQGVQNLRPWMLALALTVQEY 147

Query: 61  GSKGYRADLAVDSHLADFIAKRNKPVIELEGAETQLALFGALSRQQQSLLLEDTLKELDD 120
              GY++ LAVDSHLA  +      ++ELE AE Q+ LF  LS  QQ+  L+DTLKEL D
Sbjct: 148 ARHGYQSALAVDSHLAASVRAHGGQILELESAERQMRLFSQLSDAQQAQFLDDTLKELQD 207

Query: 121 PDSAARVVELAEFWRTANLTGLQSLLDDMAGDGSFVGRFTKEVLLDQRNPALAERIGGLL 180
                R+  L + WR A+  GL S L ++  D SF  RFT + LL  RNP LA  I  LL
Sbjct: 208 SHLNRRIDTLVDAWRHADSAGLASALRELQEDDSFTSRFTLKNLLRDRNPGLATGIAALL 267

Query: 181 RSRDRIFAAIGILHLVGPTGVPALLQQRGFKVERIY 216
           R +D+  A IGILHL GP  VPALL ++G +V ++Y
Sbjct: 268 RRQDKAVAGIGILHLTGPDSVPALLAKQGLQVRQLY 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,542
Number of extensions: 20993
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)