BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0037.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313587|ref|YP_003777679.1| signal peptide protein [Herbasp...   201   3e-53

>gi|300313587|ref|YP_003777679.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  201 bits (512), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 3   RGYLGATAAERHEPKRLAQQLHPETLTILPANSEKLVTPAKADAPDAAVATADIAKDRKP 62
           RGY GA A ER EP+RLA+QLHPE L++LPANSEKL +  ++ AP AA + +  A     
Sbjct: 22  RGYFGANATERREPQRLAEQLHPELLSVLPANSEKLASQTRSQAPAAAPSASAAAPAGAD 81

Query: 63  DATPPETKAAADPDPVAPPAPVV-ACTEMGNFNAVEVRKFDIQLSSLNLAIKPTTRSVQE 121
            A      A A   P A  A V  +CTE+GNF   + ++F  QL+SLNL  +   +  Q+
Sbjct: 82  PAAAANAAAPATQPPAAQVAAVTPSCTEVGNFTVADAKRFSEQLASLNLGDRVAQKLTQD 141

Query: 122 AASHMVYIPSQDGKEGAERKSAELRRLGIQDFYVMPESQPNPALRWAISLGVFKTEEAAK 181
             SHMVYIP QDG+EGAER+ AELRRLGI DFYV+P+S PNPALR  ISLG+F+TEEAAK
Sbjct: 142 VTSHMVYIPPQDGREGAERRIAELRRLGIGDFYVLPDSFPNPALRSGISLGIFRTEEAAK 201

Query: 182 AYIGRLIPQGVRSARIATXR 201
           AY+G+LI +GVRSARI   R
Sbjct: 202 AYVGQLISRGVRSARIIARR 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,165
Number of extensions: 20524
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)