BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0034.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313589|ref|YP_003777681.1| bifunctional biotin operon repr...   182   9e-48

>gi|300313589|ref|YP_003777681.1| bifunctional biotin operon
           repressor/biotin-[acetyl-CoA- carboxylase] synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  182 bits (463), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 94/153 (61%), Positives = 115/153 (75%), Gaps = 1/153 (0%)

Query: 1   LKWPNDVLRDGAKLAGILIETAQDKSTGAAATWTVIGIGVNLTMPPDLQQRIGRAVADVS 60
           LKWPNDVLR+GAKLAGILIETA D   G A TW VIGIG+NL +P  L+Q + RA+A V 
Sbjct: 105 LKWPNDVLREGAKLAGILIETASDGRRGDA-TWAVIGIGLNLGVPQGLEQELQRAIAAVP 163

Query: 61  ELLTHERERLLAILLSALADALADFDARGFAPFVARWNRLHAYTGRTVRILDDGRVLHEG 120
           EL    RE +LAI+ SALA+ L +F+ RGF  FV RW   HAY G+ V+I+D+GR+LHEG
Sbjct: 164 ELRKPPRETVLAIIASALAEVLTEFEQRGFGAFVRRWEAFHAYAGQAVKIVDNGRLLHEG 223

Query: 121 VAVGVDEQGCFLMDTASGRVAVTAGDVSLRLQE 153
            AVGVD  G FL+DT +G+VAV  GD+SLRLQ+
Sbjct: 224 RAVGVDMMGRFLLDTEAGQVAVMVGDLSLRLQD 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 453,957
Number of extensions: 16322
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)