BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0031.p (530 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s... 923 0.0 gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu... 144 1e-35 gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoredu... 74 2e-14 >gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase subunit F [Herbaspirillum seropedicae SmR1] Length = 533 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/520 (89%), Positives = 496/520 (95%), Gaps = 2/520 (0%) Query: 1 LDANLKAQLKAYLEKVTQPIEIVASLDDGAKSRELQELLQEIVTLSERITLVERN--DHA 58 LDANLK QLKAYLEKV+ PIEIVASLDDGAKSRE+QELLQ+IV LS+RI LVE+ D Sbjct: 2 LDANLKTQLKAYLEKVSHPIEIVASLDDGAKSREMQELLQDIVLLSDRIKLVEQRGADAQ 61 Query: 59 ARKPSFSLNRPGTDISVQFAGIPMGHEFTSLVLALLQVGGHPIKLDDKVIEQIRNLDGDY 118 R PSF LNRPGTDISV+FA IPMGHEFTSLVLALLQVGGHP+KLDDKVIEQI+NLDGDY Sbjct: 62 GRTPSFKLNRPGTDISVEFAAIPMGHEFTSLVLALLQVGGHPVKLDDKVIEQIKNLDGDY 121 Query: 119 AFETYISLTCQNCPEVVQALNVMSIINPRIRAVTVDGALFQDEVEKRQIMAVPTVYMNGE 178 FETY+SLTCQNCPEVVQALNVMSIINPRI++VT+DGALFQ EVE+RQIMAVPTVYMNGE Sbjct: 122 RFETYVSLTCQNCPEVVQALNVMSIINPRIQSVTIDGALFQGEVEQRQIMAVPTVYMNGE 181 Query: 179 VFGQGRTGVEEILAKLDTGAAARKGEELSAKEAYDVLIVGGGPAGAAAAIYAARKGIRTG 238 VFGQGRTGVEEILAKLDTGAAARKGEELSAKE YDVLIVGGGPAGAAAAIYAARKGIRTG Sbjct: 182 VFGQGRTGVEEILAKLDTGAAARKGEELSAKEPYDVLIVGGGPAGAAAAIYAARKGIRTG 241 Query: 239 VVAERFGGQVLDTLAIENFVSVKETEGPQFATALEQHVRAYDVDIMNMQRAEALVPGDGM 298 VVAERFGGQVLDTLAIENF+SV+ETEGPQFATALEQHV+AYDVDIMN+QRAEALVPGD + Sbjct: 242 VVAERFGGQVLDTLAIENFISVQETEGPQFATALEQHVKAYDVDIMNVQRAEALVPGDKL 301 Query: 299 IEVKLANGGVLKGKTVILSTGARWREVNVPGEREYRNHGVAYCPHCDGPLFKGKRVSVIG 358 IEVKLANGGVLKGKTVILSTGARWR VNVPGE+EY+N GVAYCPHCDGPLFKGKRVSVIG Sbjct: 302 IEVKLANGGVLKGKTVILSTGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVIG 361 Query: 359 GGNSGVEAAIDLAGIVSHVTLLEFAAELKADAVLVRKLKSLPNVTIVTSAQTTEITGDGK 418 GGNSGVEAAIDLAGIV+HVTL+EFAAELKADAVLVRKLKSLPNVTIVTSAQTTEITGDG+ Sbjct: 362 GGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLKSLPNVTIVTSAQTTEITGDGQ 421 Query: 419 KVNGISYKERASGEVRHVELEGVFVQIGLVPNTEWLKGTVALSKHGEIEIDAKGQTSIPG 478 +VNGISYKER +GE++HV LEGVFVQIGLVPNTEWLKGT+ALSKHGEIEIDAKGQTSIPG Sbjct: 422 RVNGISYKERETGEIKHVPLEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDAKGQTSIPG 481 Query: 479 VFAAGDVTTVPYKQIVIAVGEGSKAALSAFDHLIRSSAPE 518 VFAAGDVTTVPYKQIVIAVG G+ AALSAFDHLIRSSA + Sbjct: 482 VFAAGDVTTVPYKQIVIAVGAGATAALSAFDHLIRSSADD 521 >gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/319 (31%), Positives = 162/319 (50%), Gaps = 35/319 (10%) Query: 214 VLIVGGGPAGAAAAIYAARKGIR----TGVVAERFGGQVLDTLAIENFVSVK-ETEGPQF 268 VLI+G GPAG +AA+YAAR + TGV GGQ++ T +EN+ +GP+ Sbjct: 10 VLILGSGPAGYSAAVYAARANLNPVLITGV---EQGGQLMTTTDVENWPGDPLGVQGPEL 66 Query: 269 ATALEQHVRAYDVDIMNMQRAEALVPGDGMIEVKLA--------NGGVLKGKTVILSTGA 320 L QH + +I+ D + KL+ + G +I++TGA Sbjct: 67 MQRLLQHAERFKTEIIF----------DHIHTTKLSERPFRLIGDSGEYTADALIIATGA 116 Query: 321 RWREVNVPGEREYRNHGVAYCPHCDGPLFKGKRVSVIGGGNSGVEAAIDLAGIVSHVTLL 380 + + +P E+ + GV+ C CDG ++GK V+V+GGGN+ VE A+ L+ I S VT++ Sbjct: 117 SAQYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTII 176 Query: 381 EFAAELKADAVLVRKLK---SLPNVTIVTSAQTTEITGDGKKVNGISYKERASGEVRHVE 437 + +A+ +L+ +L S + I E+ GD V GI K + + Sbjct: 177 HRRDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIKIKSTQDDAITEIP 236 Query: 438 LEGVFVQIGLVPNTEWLKGTVALSKHGEIEIDAKGQ-----TSIPGVFAAGDVTTVPYKQ 492 + G+F+ IG PNT +G +++ ++G ++ + TSI GVFAAGDV Y+Q Sbjct: 237 VHGLFIAIGHKPNTSIFEGQLSM-QNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQ 295 Query: 493 IVIAVGEGSKAALSAFDHL 511 + + G G AAL A +L Sbjct: 296 AITSAGTGCMAALDAQRYL 314 >gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 357 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 132/308 (42%), Gaps = 33/308 (10%) Query: 213 DVLIVGGGPAGAAAAIYAARKGIRTGVVAER--FGGQVLDTLA---IENFVSVKETEGPQ 267 D +I+G GP G I+ V+ GGQ ++ I + +V G + Sbjct: 17 DAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPDKPIYDIPAVPVCTGQE 76 Query: 268 FATALEQHVRAYDVDIMNMQRAEALVPG--DGMIEVKLANGGVLKGKTVILSTGA---RW 322 L + + + ++ + LV DG +V+ + G KT+ ++ G + Sbjct: 77 LTDNLLKQIEPFS-PTFHLGQEVTLVNKREDGRFDVETSTGTKFITKTIFIAAGVGSFQP 135 Query: 323 REVNVPGEREYRNHGVAYCPHCDGPLFKGKRVSVIGGGNSGVEAAIDLAGIVSHVTLLEF 382 R + V G ++ V Y D LF+GK + + GGG+S ++ A++ G V LL Sbjct: 136 RTLKVEGIEQFEGSQVFYRVK-DPALFEGKNIVICGGGDSALDWALNFVGKAESVILLHR 194 Query: 383 AAELKADAVLVRKLKSLPN----VTIVTSAQTTEITGDGK----KVNGISYKERASGEVR 434 E +A V K+K L ++ TEI DGK KV G A G R Sbjct: 195 REEFRAAPASVAKMKELCEQYEMQLLIGQVTGTEIK-DGKLAEVKVTG------ADGVTR 247 Query: 435 HVELEGVFVQIGLVPN----TEWLKGTVALSKHGEIEIDAKGQTSIPGVFAAGDVTTVPY 490 + L+ + V GL P EW G K ++ K +T++PG+FA GD+ T P Sbjct: 248 RLPLDMLLVFFGLSPKLGPIAEW--GLEIERKQLKVMDTEKFETNVPGIFAVGDINTYPG 305 Query: 491 KQIVIAVG 498 K+ +I G Sbjct: 306 KKKLILSG 313 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,511,586 Number of extensions: 62188 Number of successful extensions: 266 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 5 Length of query: 530 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 440 Effective length of database: 1,193,720 Effective search space: 525236800 Effective search space used: 525236800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)