BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0028.p
         (617 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313597|ref|YP_003777689.1| phosphoenolpyruvate carboxykina...  1175   0.0  

>gi|300313597|ref|YP_003777689.1| phosphoenolpyruvate carboxykinase
           [Herbaspirillum seropedicae SmR1]
          Length = 622

 Score = 1175 bits (3040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/617 (90%), Positives = 586/617 (94%)

Query: 1   MEGVAALNAPAFVKHQKLINWVAEIAALTKPKSIYWCDGSQEEYDRLCAEMVAAGTMKKL 60
           M G+ A+NAPA VKHQKLINWVAEIAALTKP  IYWCDGSQEEYDRLCAEMVAAGTMKKL
Sbjct: 6   MAGIPAVNAPAHVKHQKLINWVAEIAALTKPARIYWCDGSQEEYDRLCAEMVAAGTMKKL 65

Query: 61  NQDKRPNSYLACSDPSDVARVEDRTFICSKNKDDAGPTNNWTDPAEMRTTLNGLFAGSMR 120
           N +KRPNSYLACSDPSDVARVEDRTFICS+NK+DAGPTNNWTDPAEMR TLNGLF G M 
Sbjct: 66  NPEKRPNSYLACSDPSDVARVEDRTFICSQNKEDAGPTNNWTDPAEMRQTLNGLFDGCMA 125

Query: 121 GRTLYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLGADGDFVPCVH 180
           GRTLYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLG DG+FVPCVH
Sbjct: 126 GRTLYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLGTDGEFVPCVH 185

Query: 181 TVGAPLQAGEKDVAWPCNATKYIVHYPETREIWSFGSGYGGNALLGKKCFALRIASTMGR 240
           TVGAPL AG+KDVAWPCNATKYIVHYPETREIWS+GSGYGGNALLGKKCFALRIASTMGR
Sbjct: 186 TVGAPLAAGQKDVAWPCNATKYIVHYPETREIWSYGSGYGGNALLGKKCFALRIASTMGR 245

Query: 241 DQGWLAEHMLILGVESPEGTKHYVAAAFPSACGKTNFAMLIPPKSFDGWKVTTIGDDIAW 300
            QGWLAEHMLILGVESPEG KHYVAAAFPSACGKTNFAMLIPPK+F GWKVTTIGDDIAW
Sbjct: 246 AQGWLAEHMLILGVESPEGKKHYVAAAFPSACGKTNFAMLIPPKAFGGWKVTTIGDDIAW 305

Query: 301 IKPGADGRLYAINPEAGYFGVAPGTNEKTNFNCMASLRANTIFTNVALTDDGDVWWEGMT 360
           IKPGADGRLYAINPEAGYFGVAPGTNEK+N+NCMAS+ ANTIFTNVALTDDGDVWWEGMT
Sbjct: 306 IKPGADGRLYAINPEAGYFGVAPGTNEKSNYNCMASVSANTIFTNVALTDDGDVWWEGMT 365

Query: 361 KEAPAHLIDWQGKDWTPAIAKETGRKAAHPNARFTVAATQNPVIDAAWDDPAGVPISAFI 420
           KEAPAHLIDWQGKDWTP I KETGRKAAHPNARFTVAATQNPVID AWDDPAGVPISAFI
Sbjct: 366 KEAPAHLIDWQGKDWTPEIGKETGRKAAHPNARFTVAATQNPVIDPAWDDPAGVPISAFI 425

Query: 421 FGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPFTGYNMSD 480
           FGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPF GYNMS+
Sbjct: 426 FGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPFAGYNMSE 485

Query: 481 YFQHWLNLGRKIAASPAELPKIYCVNWFRTDADGKFVWPGFGDNMRVLKWMLERIEDPQG 540
           YFQHWL++G+KIAASPAELPKIYCVNWFRTDADGKFVWPGFGDNMRVLKWML+RIEDPQG
Sbjct: 486 YFQHWLDIGKKIAASPAELPKIYCVNWFRTDADGKFVWPGFGDNMRVLKWMLDRIEDPQG 545

Query: 541 VRVGGVPHIFGVSPRYEDLQWDGLDFTPEQFATITSIDKAAWAQEIELHTELFDKLKHNL 600
           V+ GGV H+FG++PR+EDLQW+GLDF+ +QFATITSIDKAAW +E+ELH ELFDKLKH L
Sbjct: 546 VKSGGVEHLFGITPRFEDLQWEGLDFSADQFATITSIDKAAWLKELELHAELFDKLKHKL 605

Query: 601 PRELVEVKVALQKKLAA 617
           P EL  VK  L+KKLAA
Sbjct: 606 PAELQGVKDKLEKKLAA 622


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,195,311
Number of extensions: 100450
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 526
Effective length of database: 1,188,985
Effective search space: 625406110
Effective search space used: 625406110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)