BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0020.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis pro...   259   2e-70

>gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 882

 Score =  259 bits (661), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 131/150 (87%)

Query: 2   NKYTVYDEIILLDTEGNVLVQIDPATPLEHSADALIAETLNADTYVETFRFSDLRPGKER 61
           NKYTVYDEIILLDTEGNVLVQIDP TPLEHSAD LI +TL +DTYVETFR +DLRP KER
Sbjct: 152 NKYTVYDEIILLDTEGNVLVQIDPTTPLEHSADPLIRQTLESDTYVETFRATDLRPAKER 211

Query: 62  ALIYSRRMQHPQTGAVVGILCLCFHFEEEMAGIFSSHRDAEARSNMLLLDADNRVIASAD 121
           AL+YSRRM HPQTGAV+G+LCLCFHFEEEMAGIF++H D + RSNMLLLD +NRVIASAD
Sbjct: 212 ALVYSRRMHHPQTGAVIGVLCLCFHFEEEMAGIFAAHGDPQGRSNMLLLDGENRVIASAD 271

Query: 122 KLWIPVGTEVPVNRDGNAALMLFCGREYLV 151
            LWIP G+EVPVN DG   LM+  GR+YLV
Sbjct: 272 ALWIPPGSEVPVNIDGQPRLMMHSGRQYLV 301



 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 64/70 (91%)

Query: 181 QTETFLPYMRDVTKCEQSLQELNLMWRVIEASAKMNCPSEAKTILPTMAATRTGFSRLER 240
            TETFLPYMRDV +CEQSLQELN MWR+IEASAKMNCP+EAK+ILPTMAATR+GFSRLER
Sbjct: 21  HTETFLPYMRDVARCEQSLQELNQMWRIIEASAKMNCPAEAKSILPTMAATRSGFSRLER 80

Query: 241 ELVVSLVQEK 250
           ELV SL  EK
Sbjct: 81  ELVSSLAHEK 90


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,658
Number of extensions: 30806
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)