BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0019.p
         (567 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis pro...   764   0.0  

>gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 882

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/542 (68%), Positives = 443/542 (81%), Gaps = 15/542 (2%)

Query: 1   MIPVEVAFSGVISDVLTKLSPEIAEGLLSHAHSFCPPLYDIMTAAKTIQRIVWNGQVMTA 60
           MIPV+VAF+   SD L++L+PE+AEGLL+HAHSFCPPL+DIMTAAKTIQRIVWNGQVMTA
Sbjct: 323 MIPVDVAFNDSASDTLSQLAPEVAEGLLAHAHSFCPPLHDIMTAAKTIQRIVWNGQVMTA 382

Query: 61  GQRGEMLKLKTILDQISETGNRSNELFAQSIHDLYQTVLVSGMRDAEFTTSLLVDLLDRN 120
           GQRGEM+KLKTILDQISETGNRSNELFAQSIHDLYQTVLVS MRDAEFTTSL+VDLLDRN
Sbjct: 383 GQRGEMIKLKTILDQISETGNRSNELFAQSIHDLYQTVLVSSMRDAEFTTSLMVDLLDRN 442

Query: 121 LYERSDDCRWWALTPELRSALAQPAQDQATVD---KMSNILAYINGLYTVYTRIFVYDRH 177
           LYERSDDCRWWALTPELRS L   AQDQ + D   K+S+ILA IN LYTVYTR+FVYDRH
Sbjct: 443 LYERSDDCRWWALTPELRSML---AQDQVSADDSAKISSILAAINRLYTVYTRLFVYDRH 499

Query: 178 GRIVASTGEHAADIVGGNIDDDSLRQVLSLRTQQQYYVSSFTPSALYDGKDTYIYHAAVR 237
           GRIVASTG+    ++G +ID  +L  V +LR+ QQY+VS F PS LYDG+ TYIYHAA+R
Sbjct: 500 GRIVASTGDALESVLGSHIDQTTLEAVSTLRSAQQYHVSPFGPSNLYDGRHTYIYHAAIR 559

Query: 238 DLENEAVVVGGIGIVFDSTPEFSNMLASGITAKKNMKAFYIDRNARIISTTDSARAVGET 297
            L+ +A VVGGIGIVFD+ PE  NML +G++ K+ M AFY+ R+ RI+S+TD+AR VG T
Sbjct: 560 ALDQDA-VVGGIGIVFDAEPELRNMLVAGLSGKQRMSAFYVSRDGRILSSTDAARPVGGT 618

Query: 298 LDIDPALLTIPNGSRASQVTVHDGEYAIVACSASNGYREFKVSDGYQEDVIAVVFESFGA 357
           L+ID  +L + +G+  S VT+HDG+YAIVA SAS+GYREFK SDGYQEDVIAVVF+ FGA
Sbjct: 619 LEIDATMLQLDHGAHRSGVTLHDGQYAIVATSASSGYREFKTSDGYQEDVIAVVFQCFGA 678

Query: 358 VQGAGSQTDGRQYLLETDPTITDGN---EYATFFSDHNLFAISAAHVVEAVPFSEVLPTS 414
           +   G+      + LE D  +       EYATFFSDH+LFAI+A HV+EAVP+SEVLPTS
Sbjct: 679 INEGGTSNSSSAFQLEQDVAVNRNGEDLEYATFFSDHSLFAIAAVHVMEAVPYSEVLPTS 738

Query: 415 MGTRAEQIGVLNLRRDDGDGEGRRKEFVWVFDLGQMMRGTRSAVSGSSQVMIVREGEHTI 474
           MG+R EQIG+L L R     EG+ ++F+WVFDLG ++RGTRSA++ SSQVMIV+ G HTI
Sbjct: 739 MGSRPEQIGILGLER-----EGQHRDFIWVFDLGFLIRGTRSAITSSSQVMIVQHGAHTI 793

Query: 475 GLLVDELHAVPQFNPAQIMHTPFAMQGASMLVTQVIKANNGQLLIQAIDVGRLFALLIDG 534
           GLL DELHAVPQF  AQI+HTPFA+QG SMLV+ VIKAN GQLLIQAI V RLFA ++DG
Sbjct: 794 GLLADELHAVPQFGQAQIIHTPFALQGESMLVSHVIKANGGQLLIQAIAVDRLFAWVVDG 853

Query: 535 QI 536
            +
Sbjct: 854 SV 855



 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 138/337 (40%), Gaps = 36/337 (10%)

Query: 29  SHAHSFCPPLYDIMTAAKTIQRIVWNGQVMTAGQRGEM-LKLKTILDQISET----GNRS 83
           +H  +F P + D+    +++Q +    +++ A  +     + K+IL  ++ T        
Sbjct: 20  THTETFLPYMRDVARCEQSLQELNQMWRIIEASAKMNCPAEAKSILPTMAATRSGFSRLE 79

Query: 84  NELFAQSIHDLYQTVLVSGMRDAEFTTSLLVDLLDRNLYERSDDCRWWALTPELRSALAQ 143
            EL +   H+  + VL      A +    ++D++ RNL+ER+ D  + A   EL + +A 
Sbjct: 80  RELVSSLAHEKVRNVLAEIGTKARY----VIDIVVRNLFERTADVGFLATDRELCNFVAG 135

Query: 144 PAQDQATVDKMSNILAYINGLYTVYTRIFVYDRHGRIVASTG-----EHAADIVGGNIDD 198
                 +V+     L      YTVY  I + D  G ++         EH+AD +      
Sbjct: 136 LTD---SVEATRYRLREYRNKYTVYDEIILLDTEGNVLVQIDPTTPLEHSADPL------ 186

Query: 199 DSLRQVLSLRTQQQYYVSSFTPSALYDGKDTYIYHAAVRDLENEAVVVGGIGIVFDSTPE 258
             +RQ L   T    YV +F  + L   K+  + ++          V+G + + F    E
Sbjct: 187 --IRQTLESDT----YVETFRATDLRPAKERALVYSRRMHHPQTGAVIGVLCLCFHFEEE 240

Query: 259 FSNMLASGITAKKNMKAFYIDRNARIISTTDSARAVGETLDIDPALLTIPNGSRASQVTV 318
            + + A+    +       +D   R+I++ D+       L I P      N     ++ +
Sbjct: 241 MAGIFAAHGDPQGRSNMLLLDGENRVIASADA-------LWIPPGSEVPVNIDGQPRLMM 293

Query: 319 HDGEYAIVACSASNGYREFKVSDGYQEDVIAVVFESF 355
           H G   +V   AS GY+ +    G+Q  V+  V  +F
Sbjct: 294 HSGRQYLVRTFASEGYQGYPGPTGWQGQVMIPVDVAF 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,604,553
Number of extensions: 64308
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 567
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,193,720
Effective search space: 569404440
Effective search space used: 569404440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)