BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0016.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 269 8e-74 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 86 1e-18 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 86 2e-18 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 78 4e-16 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 70 9e-14 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 269 bits (688), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 126/172 (73%), Positives = 148/172 (86%), Gaps = 3/172 (1%) Query: 1 VRLGLSALMVTHDQGEAMAISDRILLLNNGKIEQQGTPQSMYQTPDTLFTAEFMGSNNRL 60 VRLGLSALMVTHDQGEAMAISDRILLLNNG+IEQQGTPQSMYQ P+TLFTAEFMGSNN+L Sbjct: 191 VRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKL 250 Query: 61 KGKVLQRDGQRVTLQVEGGTVVASARGGN---TGNEAIGIIRLEQVRIADHQTDNAIRLP 117 +VL R+G+RVT++++GGT VA+ RG + G + GIIR+EQVRI+ +DNAIRLP Sbjct: 251 AAEVLSREGERVTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRISGEASDNAIRLP 310 Query: 118 LSTCMYLGDRWECLFKATSADSTTVGLRAYAPHKLEQGEYWLTLPEQALWAF 169 LSTCMYLGDRWECLFK + +VGLRAYAP +L+QGEYWL+LPEQ+LWAF Sbjct: 311 LSTCMYLGDRWECLFKVDGGPAGSVGLRAYAPQRLDQGEYWLSLPEQSLWAF 362 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 14/157 (8%) Query: 2 RLGLSALMVTHDQGEAMAISDRILLLNNGKIEQQGTPQSMYQTPDTLFTAEFMGSNNRLK 61 RLG++ + VTHDQ EA+ +SDR+ + + G I+Q +Y+ PD F A F+G NNR K Sbjct: 201 RLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFK 260 Query: 62 GKVLQRDGQRVTLQVEGGTVVA--SARGGNTGNEAIGIIRLEQVRIA--DHQTDNAIRLP 117 G V G+ T+++ G + + + G +R E++R+A N+IR Sbjct: 261 GSVESVQGEHCTVRLTDGAALTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNSIRAS 320 Query: 118 LSTCMYLGD----------RWECLFKATSADSTTVGL 144 ++ +Y GD + +C K + +D GL Sbjct: 321 IAGLIYFGDHVRVRCTVAGQEDCFVKLSLSDPALSGL 357 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 3 LGLSALMVTHDQGEAMAISDRILLLNNGKIEQQGTPQSMYQTPDTLFTAEFMGSNNRLKG 62 LG++A+ VTHDQGEAMA+ DRI+++ GKI Q GTPQ +Y P F AEF+G+ NR+ G Sbjct: 191 LGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDG 250 Query: 63 KVLQRDGQRVTLQVEGGTVVASARGGNTGNEAIGIIRLEQVRIADHQTDNA--IRLPLST 120 V G R LQ+ GT+ G A + R E V + D +A +R L Sbjct: 251 IVA---GDR--LQLPTGTLPLPP-DAVAGQPAQALFRPEDVEVIDITEADAHCLRGKLIN 304 Query: 121 CMYLGDR 127 +LGDR Sbjct: 305 TFFLGDR 311 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 77.8 bits (190), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 28/180 (15%) Query: 5 LSALMVTHDQGEAMAISDRILLLNNGKIEQQGTPQSMYQTPDTLFTAEFMGSNN-----R 59 ++ LMVTHDQ EAM ++DRI ++ +G+IEQ GTP+ +Y+ P T F A+F+G N R Sbjct: 192 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANWLPFTR 251 Query: 60 LKGKVLQRDGQRVTLQVEGGTVVASARGGNTGNEAIG--IIRLEQVRI-ADHQTDNAIRL 116 L G + G + +Q + + A G R E V++ +D N Sbjct: 252 LSGSQVAVGGLHLEIQ------------PDESDRASGRLFCRPEAVQLFSDESCANRFLA 299 Query: 117 PLSTCMYLGDRWECLFKATS-------ADSTTVGLRAYAPHKLEQGEYWLTLPEQALWAF 169 + +YLGDR+ A + AD ++ A + G W+TLP Q+L F Sbjct: 300 RVVDRIYLGDRYRLALAADALPGQTLLADVSSQAHERVASLDTQDG-LWVTLPRQSLQVF 358 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 70.1 bits (170), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 16/159 (10%) Query: 3 LGLSALMVTHDQGEAMAISDRILLLNNGKIEQQGTPQSMYQTPDTLFTAEFMGSN--NRL 60 L + + VTHDQ EAM ++D+I++L+ G+IEQ G+PQ +Y P F A F+GS N + Sbjct: 183 LKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNFI 242 Query: 61 KGKV--LQRDGQRVTLQVEGGTVVASARGGNT---GNEAIGIIRLEQVRIADHQTDNAIR 115 G V +Q DG V +Q+ GG + +A G+T G + +R E + IA Q A++ Sbjct: 243 DGTVAAIQADG--VQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQA--ALQ 298 Query: 116 LPLSTCMYLGDRWECLFKATSADSTTVGLRAY----APH 150 + LGD + L+ A + LR APH Sbjct: 299 ARCTALELLGD-FSYLYAAYEGSEDALILRVPDSLDAPH 336 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 559,252 Number of extensions: 22202 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 14 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)