BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0015.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313614|ref|YP_003777706.1| DNA recombination-dependent gro...   310   8e-86

>gi|300313614|ref|YP_003777706.1| DNA recombination-dependent growth
           factor C protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  310 bits (793), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 147/181 (81%), Positives = 166/181 (91%)

Query: 39  DPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSMTDWLASDEAPSGFT 98
           DPVNGWL+VDAGSP KAEEVLKLL KAIPKFPLETLRTV SP ++MTDWLASDEAP+GFT
Sbjct: 128 DPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASDEAPNGFT 187

Query: 99  VDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTWNDRVSFVLTENLSV 158
           VDQDTELR++ +SKATVR+VRHTLE ED++RHIE+GKQCTRLALTW D+VSFVLTENLSV
Sbjct: 188 VDQDTELRSTAESKATVRYVRHTLEAEDIRRHIEAGKQCTRLALTWADKVSFVLTENLSV 247

Query: 159 KKITPLDVLKEDSDVTSKNDDERFDGDFMLMTGEVSKMLADLVEALGGQLRENDGTAALA 218
           K+I PLDVLKEDS++  KNDDERFDGDFMLMTGE++K+L  LV+ALGGQLRENDG  A A
Sbjct: 248 KRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLRENDGALAQA 307

Query: 219 A 219
           A
Sbjct: 308 A 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,470
Number of extensions: 22521
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)