BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0010.p (856 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep ... 1099 0.0 gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/sign... 365 e-102 gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her... 305 1e-83 gi|300309409|ref|YP_003773501.1| glutamine ABC transporter perip... 226 7e-60 gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Her... 191 3e-49 >gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1] Length = 690 Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/582 (87%), Positives = 557/582 (95%) Query: 1 MNGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRHIAALTFTNKAALEMQERIAKLLKE 60 M GPCLVLAGAGSGKTRVITQKIAHLIENCGYESR+IAALTFTNKAALEMQERIAKLLK+ Sbjct: 19 MAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEMQERIAKLLKD 78 Query: 61 PKQAKHLTVSTFHSLGVKILRQEAKHLGLKDRFSIMDSDDCFSLVQDLAVTTDKQLIRRI 120 PKQAKHLTVSTFHSLGVKILRQE++HLGLKDRFSIMDSDDCFSLVQ+LAVTTDK +IR + Sbjct: 79 PKQAKHLTVSTFHSLGVKILRQESQHLGLKDRFSIMDSDDCFSLVQELAVTTDKAIIRGV 138 Query: 121 QNAMSLWKNGLIDPELALRNAVDEEEAVAARIYRSYVATLSAYQAVDFDDLIRLPVELFR 180 QN++SLWKNGL+DP+LA +NA E+EA AARIYRSYVATL AYQAVDFDDLIRLPVELFR Sbjct: 139 QNSISLWKNGLVDPDLAEKNARTEDEAQAARIYRSYVATLKAYQAVDFDDLIRLPVELFR 198 Query: 181 NNEEVRDRWQRRLRYLLVDEYQDTNTCQYELVKLLVSGIGKKPMFTAVGDDDQAIYAWRG 240 +NEEVRDRWQR+LRYLL+DEYQDTNTCQYELVKLLV+GIGKKPMFTAVGDDDQAIYAWRG Sbjct: 199 SNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGIGKKPMFTAVGDDDQAIYAWRG 258 Query: 241 ATIENLKTLQIDFPNLHLIKLEQNYRSSTRILQAANSVISNNPKLFEKALWSEHGLGDPV 300 ATIENLK L +DFPNLHLIKLEQNYRSSTRILQAAN+VISNNPKLF+K LWSEHGLGDP+ Sbjct: 259 ATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVISNNPKLFDKTLWSEHGLGDPI 318 Query: 301 KVMAMDDDEAEAEQVAIMLSAHRFERRAKFSDYAILYRGNHQARIFEKALRRERIPYVMS 360 VMAMDD+EAEA+Q+AI LSAHRFERRAKF+DYAILYRGNHQARI EK+LRRERIPYVMS Sbjct: 319 TVMAMDDEEAEADQIAITLSAHRFERRAKFADYAILYRGNHQARILEKSLRRERIPYVMS 378 Query: 361 GGQSYFDRAEIKDIISYLRLIANQDDDPAFIRAVTTPRRGIGQATLEVLGTVAGQWQCSL 420 GGQSYFDRAEIKDII+YLRLIANQDDDPAFIRAVTTPRRG+GQATLEVLGT+AGQWQCSL Sbjct: 379 GGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVGQATLEVLGTLAGQWQCSL 438 Query: 421 FEAVYKGALEDKLPDKQLLPLRQFCDFINNLESRASRPGPSGSGENAAQVLDDMMEAINY 480 FEAVYKG LEDKL D+QLLPLR+FCDFIN LESRA+RPGPSGSGENA +VLDDMMEAINY Sbjct: 439 FEAVYKGGLEDKLTDRQLLPLRKFCDFINALESRATRPGPSGSGENAGKVLDDMMEAINY 498 Query: 481 EGYCYDAFDERQAQSKWQNVQEFTSWLKERGCGGKDGEGEEKNLLELTQMVALMTMLEGK 540 E Y YD+F+ER AQ++WQNV +F +WLKER CGG+DGEGEEKNLLE+TQMVALM+MLEG+ Sbjct: 499 EFYLYDSFEERAAQARWQNVVDFINWLKERACGGRDGEGEEKNLLEITQMVALMSMLEGR 558 Query: 541 DEEQDAVRMSTLHASKGLEYPHVFLIGVEEGILPHKGDPDAP 582 DEEQDAVRMSTLHASKGLE+PHVFL+GVEEGILPHKGDPD P Sbjct: 559 DEEQDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTP 600 >gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/224 (78%), Positives = 201/224 (89%) Query: 599 KVYLVGVESAYAPFSAENEKKEVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNFLAQGD 658 +VY+VGVESAYAPFS+ENE+K+VVGFDID+MKALA+KIGIEVKFVPTPFEGFFNFLAQGD Sbjct: 47 RVYVVGVESAYAPFSSENEQKDVVGFDIDIMKALAKKIGIEVKFVPTPFEGFFNFLAQGD 106 Query: 659 RDLLISAITITDERKQTVDFSEPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQSATSGD 718 RDLLISAITITDERK++V FSEPYF A+Q IA+PAAD KV K +DLK L VG QSATSGD Sbjct: 107 RDLLISAITITDERKKSVAFSEPYFVATQTIALPAADTKVSKMEDLKPLTVGTQSATSGD 166 Query: 719 EIVQQLLGKNNPNIKRLDSTPLALKELETGGVDAVVADDAVVKNYITNNPSSKLRTVSDA 778 E+VQQ+LGKN+ IKR DSTPLALKELE+GGVDAVVAD+ VVKNYI NNP+SKLRTV+D Sbjct: 167 ELVQQVLGKNSAKIKRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDP 226 Query: 779 GFPKEYYGIAVRKGNTELLNKVNKGMADLKADGTFDKISTQYFG 822 FPKE YGIAVRK + ELL K+NKG+A++KADG+F IS QYFG Sbjct: 227 SFPKEDYGIAVRKDDPELLAKINKGLAEMKADGSFAAISAQYFG 270 >gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 759 Score = 305 bits (780), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 208/598 (34%), Positives = 311/598 (52%), Gaps = 38/598 (6%) Query: 5 CLVLAGAGSGKTRVITQKIAHLIENCGYESRHIAALTFTNKAALEMQERIAKLLKEPKQA 64 L+LAGAGSGKTRV+T +IA LI+ I A+TFTNKAA EM R++ +L P Sbjct: 23 ALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEMTARLSGML--PINT 80 Query: 65 KHLTVSTFHSLGVKILRQEAKHLGLKDRFSIMDSDDCFS----LVQDLAVTTDKQLIRRI 120 + + + TFH L ++LR K GL F I+D+ D S L++ + V +K R + Sbjct: 81 RGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSAIKRLLKQMNVDDEKYPPRNL 140 Query: 121 QNAMSLWKN-GLIDPELALRNAVDEEEAVAARIYRSYVATLSAYQAVDFDDLIRLPVELF 179 ++ K+ GL ++ +A D+ +Y Y VDF +L+ EL Sbjct: 141 MYFINSAKDQGLRAKDV---DAYDDYNRKFVELYELYDQQCQREGVVDFAELLLRTYELL 197 Query: 180 RNNEEVRDRWQRRLRYLLVDEYQDTNTCQYELVKLLVSGIGKKPMFTAVGDDDQAIYAWR 239 N+ +R+ +Q R R++LVDE+QDTN QY+ +KL+ G+ AVGDDDQ+IYA+R Sbjct: 198 SRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMA---GQHNAVFAVGDDDQSIYAFR 254 Query: 240 GATIENLKTLQIDFPNLHLIKLEQNYRSSTRILQAANSVISNNPKLFEKALWSEHGLGDP 299 GA + N++ + +F +LIKLEQNYRS IL AN +I+NN K K L ++ G G+ Sbjct: 255 GANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANNSKRLGKNLRTDAGHGEQ 314 Query: 300 VKVMAMDDDEAEAEQVAIMLSAHRFERRAKFSDYAILYRGNHQARIFEKALRRERIPYVM 359 V+V D EA+ + + E A+ S+ AILYR N Q+R+ E AL IPY + Sbjct: 315 VRVYEATSDLQEAQWIIEQVKDLIAEGWAR-SEIAILYRSNAQSRVLEHALFSSAIPYRV 373 Query: 360 SGGQSYFDRAEIKDIISYLRLIANQDDDPAFIRAVTTPRRGIGQATLEVLGTVAGQWQCS 419 GGQ +F+RAEIK I+YL+L+ N +D AF+R V P RGIG +E L A Q+ CS Sbjct: 374 YGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAMESLQDAARQYGCS 433 Query: 420 LFEAV-------------YKGALEDKLPDKQLLPLRQFCDFINNLESRASRPGPSGSGEN 466 L+ AV + +E + Q LPL + + +L + G + Sbjct: 434 LYAAVPYVAGKAGSSLNAFVKLIEGARFETQHLPLPEMVKVVLDLSGLMTHYRNEKEGAD 493 Query: 467 AAQVLDDMMEA----INYEGYCYDAFDERQAQSKWQNVQEFTSWLKERGCGGKDGEGEEK 522 + L+ ++ A ++ EGY DA + G D + Sbjct: 494 RIENLEQLVSAATLFVSEEGYGLDA---PAFLGPQAQATAGAAITTADGVEVLDADAPLV 550 Query: 523 NLLELTQMVALMTMLEGKDEE----QDAVRMSTLHASKGLEYPHVFLIGVEEGILPHK 576 ++ LE D + QDA+++ T+H++KGLE+ VF+ G+EEG+ PH+ Sbjct: 551 TIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGMEEGLFPHE 608 >gi|300309409|ref|YP_003773501.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 226 bits (576), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 155/228 (67%), Gaps = 1/228 (0%) Query: 594 AAAAAKVYLVGVESAYAPFSAENEKKEVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNF 653 A AA + Y+VG Y PF E KKE+VGFDID++KA++Q +++ V TP+EG F Sbjct: 23 ALAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKAISQASNFKIQLVSTPWEGIFAT 82 Query: 654 LAQGDRDLLISAITITDERKQTVDFSEPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQS 713 L QGDRD++IS ITITD+R Q VDFS PYF A Q+I + ADAK+ DLK +V V + Sbjct: 83 LGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVI-ITNADAKITSLSDLKKTQVAVVN 141 Query: 714 ATSGDEIVQQLLGKNNPNIKRLDSTPLALKELETGGVDAVVADDAVVKNYITNNPSSKLR 773 +T+GD +V + LGK + I R D+T L L+EL GGVDA V D V+K YI ++P K + Sbjct: 142 STAGDIVVSEELGKASTAIHRFDNTVLMLEELYRGGVDAAVGDVGVIKFYIKSHPEKKFK 201 Query: 774 TVSDAGFPKEYYGIAVRKGNTELLNKVNKGMADLKADGTFDKISTQYF 821 V D+ F ++Y+GIAV+KGN ELL+K+N G+ + ADGT+ KI +F Sbjct: 202 VVGDSKFVRQYFGIAVKKGNKELLDKINAGLKKIVADGTYAKIYKTWF 249 >gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 707 Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 173/601 (28%), Positives = 292/601 (48%), Gaps = 72/601 (11%) Query: 4 PCLVLAGAGSGKTRVITQKIAHLIENCGYESRHIAALTFTNKAALEMQERIAKLLKE--- 60 P L++AGAGSGKT + ++A L+ G + + I L+F+ +AA +M R+ +++ + Sbjct: 47 PLLIVAGAGSGKTNTLAHRVARLVLE-GADPQRILLLSFSRRAAADMGRRVGQVIAQVLG 105 Query: 61 ------PKQAKHLTVSTFHSLGVKILRQEAKHLGLKDRFSIMD---SDDCFSLVQ-DLAV 110 P Q H + TFH++G ++LR+ AK +GL++ F+I D S+D L++ D+ + Sbjct: 106 LAASDTPPQL-HWS-GTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLRHDMGL 163 Query: 111 TTDKQLIRRIQNAMSLWK---NGLIDPELALRNAVD---EEEAVAARIYRSYVATLSAYQ 164 + ++ ++++ N D L+ E E ++ YV Sbjct: 164 SATEKRFPLKATCLAIYSRAVNTRQDLGEVLQQHFPWCCEWERPLGELFGRYVDAKEEQH 223 Query: 165 AVDFDDLIRLPVELFRNNEEVRDRWQRRLRYLLVDEYQDTNTCQYELV-KLLVSGIGKKP 223 +D+DDL+ ++ + ++ +R ++LVDEYQDTN Q E++ ++ G G Sbjct: 224 VLDYDDLLLFWADML-GDAQIAQSVGQRFDHVLVDEYQDTNRLQAEILQRMKPDGAG--- 279 Query: 224 MFTAVGDDDQAIYAWRGATIENLKTLQIDFPNL-----HLIKLEQNYRSSTRILQAANSV 278 TAVGDD QAIY++RGAT+ N+ +DFP L L+ LEQNYRS+ IL A+N+V Sbjct: 280 -VTAVGDDAQAIYSFRGATVRNI----LDFPGLFTQPVRLLTLEQNYRSTQPILHASNAV 334 Query: 279 ISNNPKLFEKALWSEHGLGDPVKVMAMDDDEAEAEQVAIMLSAHRFERRAKFSDYAILYR 338 I++ P+ K LWS+ +++ + D+ +A VA + AHR E A+L+R Sbjct: 335 IADAPERHVKHLWSDKPSSQKPQLVVIPDEAEQARWVANRILAHR-EEGLTLKSQAVLFR 393 Query: 339 GNHQARIFEKALRRERIPYVMSGGQSYFDRAEIKDIISYLRLIANQDDDPAFIRAVT-TP 397 + E L R IP+V GG + + IKD+++ LRL N A +RA+ P Sbjct: 394 TATHSAALELELARRNIPFVKFGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIP 453 Query: 398 RRGIGQATLEVLGTVAGQWQCSLFEAVYKGALEDKLPDKQLLPLRQFCDFINNLESRASR 457 G+G AT + + + GA P L + F D L RAS Sbjct: 454 --GVGPATARKVLDLMAAAADPADALLNFGA-----PANIALQWQAFAD-TYALMRRASA 505 Query: 458 PGPSGSGENAAQVLDDMMEAINYEGYCYDAFDERQAQSKWQNVQEFTSWLKERGCGGKDG 517 P+ D++ A ++ Y Q Q ++ + Q + +++ Sbjct: 506 SWPT-----------DILAARDW--YL------PQLQERYDDAQARAADIEQLAVLANGY 546 Query: 518 EGEEKNLLELT----QMVALMTMLEGKDEEQDAVRMSTLHASKGLEYPHVFLIGVEEGIL 573 EK L ELT + + + +DE D + +ST+H++KG E+ V ++ V +G + Sbjct: 547 ASREKFLTELTLDPPEASSDFSGPPLRDE--DYLTLSTIHSAKGQEWRSVHILNVVDGCI 604 Query: 574 P 574 P Sbjct: 605 P 605 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,307,333 Number of extensions: 87172 Number of successful extensions: 322 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 19 Length of query: 856 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 763 Effective length of database: 1,179,515 Effective search space: 899969945 Effective search space used: 899969945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)