BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0004.p (383 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 532 e-152 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 225 6e-60 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 218 5e-58 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 197 9e-52 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 178 7e-46 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 532 bits (1370), Expect = e-152, Method: Compositional matrix adjust. Identities = 269/378 (71%), Positives = 310/378 (82%), Gaps = 1/378 (0%) Query: 1 VSGYDDLPPLPANVKRSEAYPALVRFYQAEYHGQPVRIAALYQPVYDDTMRGIALIQVGE 60 VSGYDDLPP+P +VKRSE YPALVRFYQA+YH QPVRIAAL QPVYDD++RGIALIQVGE Sbjct: 100 VSGYDDLPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAALLQPVYDDSIRGIALIQVGE 159 Query: 61 TMDARRGMTRKILFDTMWRQGVLVTVAALLVWFAVRFVLRPLMQLRSEVESRAPTDLSDF 120 TM+ R GMTRKILFDT+WRQG LVTVAALLVWFAVRFVLRPLMQL+ EVESRAPTDLS F Sbjct: 160 TMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGF 219 Query: 121 DPARVHKEVRPLVLAMNGYMERLQTLITGQRRFIADASHQLRTPLTVLKTQAELALREFD 180 D A VHKE+RPLV AMNGYM RLQ LI+ QRRFIADASHQLRTPLTVLKTQ+EL LRE Sbjct: 220 DTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELR 279 Query: 181 RTPGDPRALRELVESIAGTTDSTVHLANRLLTLARAEHGAVEGGIGPVSLTDAARQVALE 240 R D LR+LVE +A TTD+ VHLANRLLTLARAEHGA EGG P+SL+DAARQVALE Sbjct: 280 REQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALE 339 Query: 241 LAQNAVAKRIDLSFDAAGDVLIDGSPLLLRELVVNLLDNAIRYTPADGRIAVRVGYQKIA 300 L+Q AV++ I L+F+ GDV I+ + LLL EL+VNLLDNAIRYTPA G + +RV Q Sbjct: 340 LSQQAVSREIGLAFEEEGDVSIEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSP 399 Query: 301 AD-SHAVLEVEDTGAGIPASDRERVFAPFYRAPSAQLVNPHGAGLGMSIVRDIASAHGAE 359 + A+LEVED+G GIPA++RE+VF PFYRA + Q VNP G GLG+SIVR+IA+ H A Sbjct: 400 GQPTVALLEVEDSGPGIPAAEREKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRAS 459 Query: 360 IILADGANDAGLLVKVRF 377 + L A +GL+V++ F Sbjct: 460 VTLDAPAQGSGLVVRIVF 477 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 225 bits (573), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 208/364 (57%), Gaps = 23/364 (6%) Query: 7 LPPLPANVKRSEAYPALVRFYQAEYHGQPVRIAALYQPVYDDTMRG-------IALIQVG 59 +P P + RS V+F HG VRIA L + + +A +QVG Sbjct: 1 MPQPPPDEDRSTV--GTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVG 58 Query: 60 ETMDARRGMTRKILFDTMWRQGVLVTVAALLVWFAVRFVLRPLMQLRSEVESRAPTDLSD 119 ET++ R + +I+ + Q +++ VA LVWFA+ L PL +L+ + +R P DLS Sbjct: 59 ETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSP 118 Query: 120 FDPARVHKEVRPLVLAMNGYMERLQTLITGQRRFIADASHQLRTPLTVLKTQAELALREF 179 D +V +E+ PLV ++N + RL I Q+RFIADA+HQ++TPL ++ Q+ELALR+ Sbjct: 119 IDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQD 178 Query: 180 DRTPGDPRALRELVESIAGTTDSTVHLANRLLTLARAEHGAVE-GGIGPVSLTDAARQVA 238 D+ +R +E +A ++++ L N+LL+LARAE+ + GG+ PV L + AR V Sbjct: 179 DQV-----DVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVV 233 Query: 239 LELAQNAVAKRIDLSFDAAGD-VLIDGSPLLLRELVVNLLDNAIRYTPADGRIAVRVGYQ 297 + + +RIDL F+ +LI G+P++LREL+ NLLDNA+ YTP DG V V + Sbjct: 234 QDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRAR 293 Query: 298 KIAADSHAVLEVEDTGAGIPASDRERVFAPFYR---APSAQLVNPHGAGLGMSIVRDIAS 354 A+LEVED G GIP ++R VF FYR PS G GLG++IVR+IA Sbjct: 294 TDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTG----SGLGLGLAIVREIAQ 349 Query: 355 AHGA 358 H A Sbjct: 350 QHEA 353 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 218 bits (556), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 203/370 (54%), Gaps = 18/370 (4%) Query: 3 GYDDLPPLPANVKRSEAYPALVRFYQAEYHGQPVRIAALYQPVYDDTMRGIALIQVGETM 62 G DLP + YPAL Y+ Y+G PVR+AAL+QPV + RG AL+QV ETM Sbjct: 102 GDADLPSYKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETM 161 Query: 63 DARRGMTRKILFDTMWRQGVLVTVAALLVWFAVRFVLRPLMQLRSEVESRAPTDLSDFDP 122 + R + RKI ++T+ RQ L+ V + + VR L+P+ LR +++ R DLS P Sbjct: 162 ENRSALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAP 221 Query: 123 ARVHKEVRPLVLAMNGYMERLQTLITGQRRFIADASHQLRTPLTVLKTQAELALREFDRT 182 +E++P + A+N M RL+ L+ Q+RF+A+ASHQLRTPL VLKTQ + LR Sbjct: 222 PMAPRELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLR----- 276 Query: 183 PGDPRALRELVESIAGTTDSTVHLANRLLTLARAEHGAVEGGIGPVSLTDAARQVALELA 242 GD A + + ++GT + LAN+LL+LA+ E G L AR+ A++L+ Sbjct: 277 -GDAPA-PVIWQEMSGTVERATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLS 334 Query: 243 QNAVAKRIDLSFDAAGDVLIDGSPLLLRELVVNLLDNAIRYTPADGRIAVRVGYQKIAAD 302 K +D +A +L+ G P ++ EL+ NLL NAIR+TPA GR+ +R+ A + Sbjct: 335 PLIAEKDLDFELEAE-KILVMGHPWMIGELISNLLHNAIRHTPAQGRLGIRI----TARE 389 Query: 303 SHAVLEVEDTGAGIPASDRERVFAPFYRAPSAQLVNPHGAGLGMSIVRDIASAHGAEIIL 362 A L + D+G GI E VF F S+ GLG++I +I + A I L Sbjct: 390 DVAELLIWDSGEGIDDQAMENVFKAFSSNVSS------AGGLGLTICGEIVDSMQATISL 443 Query: 363 ADGANDAGLL 372 + + G + Sbjct: 444 RNRVGEDGTI 453 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 197 bits (502), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/377 (35%), Positives = 210/377 (55%), Gaps = 23/377 (6%) Query: 8 PPLPANVKRSEAYPALVRFYQAEYHGQPVRIAALYQPVYDD-TMRGIALIQVGETMDARR 66 P PA + YP + ++G+P+R+ + + ++D+ T+R +A + VG+TM R+ Sbjct: 98 PDFPAAPDFAALYPV---YSTTSFNGKPLRVVSYIRALFDEGTLRMVA-VSVGQTMQGRQ 153 Query: 67 GMTRKILFDTMWRQGVLVTVAALLVWFAVRFVLRPLMQLRSEVESRAPTDLSDFDPARVH 126 M ++ RQ VL+ +A LV + LRPL+ L+ E+ +R P L+ + Sbjct: 154 EMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQ 213 Query: 127 KEVRPLVLAMNGYMERLQTLITGQRRFIADASHQLRTPLTVLKTQAELALREFDRTPGDP 186 +E+RP+V A+N Y+ RL +T Q+RF+ADA+HQLRTPL V+ +Q + A R+ D DP Sbjct: 214 QELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFA-RQLD----DP 268 Query: 187 RALRELVESIAGTTDSTVHLANRLLTLARAEHGAVEGGI-GPVSLTDAARQVALELAQNA 245 + +++ S+ + S L N+LL L++AE PV L + V EL+ A Sbjct: 269 ARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGLA 328 Query: 246 VAKRIDLSFDAAGD-VLIDGSPLLLRELVVNLLDNAIRYTPADGRIAVRVGYQKIAADSH 304 + K IDL + + +++G+ L +++NL+DNA+RYTP G+ V VG +K S Sbjct: 329 LKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGK--VTVGLEK--KRSQ 384 Query: 305 AVLEVEDTGAGIPASDRERVFAPFYR--APSAQLVNPHGAGLGMSIVRDIASAHGAEIIL 362 ++ V D G GIPA RERVF FYR AP + G+GLG++IVR+I A I L Sbjct: 385 MIITVSDNGPGIPAEVRERVFERFYRNAAP-----DQPGSGLGLAIVREIVQASQGSIRL 439 Query: 363 ADGANDAGLLVKVRFPA 379 A +GL+ V PA Sbjct: 440 DAPAQGSGLVATVSLPA 456 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 178 bits (451), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 187/381 (49%), Gaps = 23/381 (6%) Query: 1 VSGYDDLPPLPANVKRSEAYPALVRFYQAEYHGQPVRIAALYQPVYDDTMRGIALIQVGE 60 V G P LPA S+ + + Y E G+PVRIAA+ V + G+ + V E Sbjct: 97 VVGDKGFPQLPA----SDVFDRPIN-YDGEMRGEPVRIAAMQVRVKN----GVIWVAVAE 147 Query: 61 TMDARRGMTRKILFDTMWRQGVLVTVAALLVWFAVRFVLRPLMQLRSEVESRAPTDLSDF 120 T+ R IL + G L + +V AVR LRPL L+ +E R L Sbjct: 148 TIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAI 207 Query: 121 DPARVHKEVRPLVLAMNGYMERLQTLITGQRRFIADASHQLRTPLTVLKTQAELALREFD 180 D E++PL++AMN M R+ Q+ F+AD +HQLRTPLT LK Q EL + Sbjct: 208 DGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQ 267 Query: 181 RTPGDPRALRELVESIAGTTDSTVHLANRLLTLARAEHGAVEG-GIGPVSLTDAARQVAL 239 P R+L + S+ + + + +LL LAR+E G E + +SL + Sbjct: 268 DQPDTARSLAMMNSSV----ERMIRQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQ 323 Query: 240 ELAQNAVAKRIDLSFDAAGDVLIDGSPLLLRELVVNLLDNAIRYTPADGRIAVRVGYQKI 299 + A KRIDL FD + G LL +L+ NL+DNA+RY+P G + VR ++ Sbjct: 324 HFIEEADKKRIDLGFDLR-PARLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQD 382 Query: 300 AADSHAVLEVEDTGAGIPASDRERVFAPFYRAPSAQLVNPHGAGLGMSIVRDIASAHGAE 359 A VL VED+G GI RE +F FYRA G+GLG++IVR+IA HG Sbjct: 383 A----TVLSVEDSGPGIAPEHRELIFDRFYRAND----KVAGSGLGLAIVREIAHDHGGV 434 Query: 360 IILADGANDAGLLVKVRFPAA 380 I + G + VRFP A Sbjct: 435 ISVDCKEQGQGTIFTVRFPLA 455 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,234,299 Number of extensions: 53709 Number of successful extensions: 356 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 298 Number of HSP's successfully gapped: 33 Length of query: 383 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 296 Effective length of database: 1,207,925 Effective search space: 357545800 Effective search space used: 357545800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)