BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0241.0003.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313818|ref|YP_003777910.1| two component transcription reg... 258 3e-70 gi|300309981|ref|YP_003774073.1| two component response regulato... 152 4e-38 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 144 6e-36 gi|300312680|ref|YP_003776772.1| two component response regulato... 137 7e-34 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 119 2e-28 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 258 bits (659), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 131/184 (71%), Positives = 149/184 (80%), Gaps = 20/184 (10%) Query: 14 MRILLVEDHVELSRWISKALQDAHLTVECANNGDDADSLLLTQEYALVILDLTLPKMDGL 73 MRILLVEDH+ELSRW++KA++DAHLTVECA+NG DADSLLLTQ+YALVILDLTLP+MDG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 74 DVLKRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPNYLAKPFELVLGADDYLA 133 +VLKR+RARG+ PVL+LTAR + DRV GL +GAD DYLA Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGAD--------------------DYLA 100 Query: 134 KPFELVELEARVKALLRRAQGNEAVTIQCGALSFDTVSRMFTYGGAMLALTPREHAVLET 193 KPFEL ELEARVKALLRR+Q NEAVT+ CGALSFDTVSR FTYGG +LALTPREHAVLE Sbjct: 101 KPFELEELEARVKALLRRSQNNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEA 160 Query: 194 LITR 197 LI R Sbjct: 161 LIVR 164 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 152 bits (383), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/185 (47%), Positives = 114/185 (61%), Gaps = 20/185 (10%) Query: 14 MRILLVEDHVELSRWISKALQDAHLTVECANNGDDADSLLLTQEYALVILDLTLPKMDGL 73 MRILL ED L+ ++++L+ + +C NG +ADS L TQ++ L+ILDL LPKM GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 74 DVLKRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPNYLAKPFELVLGADDYLA 133 +VL+RLRAR S +PVL+LTA D++ RV GL+LGAD DY+A Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGAD--------------------DYMA 100 Query: 134 KPFELVELEARVKALLRRAQGNEAVTIQCGALSFDTVSRMFTYGGAMLALTPREHAVLET 193 KPF L ELEARV+AL RR G I+ G LS+D V R+ G ML L+ RE +LE Sbjct: 101 KPFALSELEARVRALTRRGAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEV 160 Query: 194 LITRA 198 L+ R Sbjct: 161 LLQRT 165 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 144 bits (363), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 20/184 (10%) Query: 14 MRILLVEDHVELSRWISKALQDAHLTVECANNGDDADSLLLTQEYALVILDLTLPKMDGL 73 M++LL+ED+ +L+ W+ + L++ V+ A +G+ AD +L + Y +V+LDL LPK+ G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 74 DVLKRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPNYLAKPFELVLGADDYLA 133 +VL+RLR R + +PV++LTA +I ++V L GADDYLV Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLV-------------------- 100 Query: 134 KPFELVELEARVKALLRRAQGNEAVTIQCGALSFDTVSRMFTYGGAMLALTPREHAVLET 193 KPFE+ EL AR+K L+RR ++A I CG L +D+ +R F GG LAL REH VLE Sbjct: 101 KPFEIRELVARIKVLVRRQTPDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEV 160 Query: 194 LITR 197 LI R Sbjct: 161 LILR 164 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 137 bits (346), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 85/187 (45%), Positives = 110/187 (58%), Gaps = 27/187 (14%) Query: 14 MRILLVEDHVELSRWISKALQDAHLTVECANNGDDADSLLLTQEY--ALVILDLTLPKMD 71 M +LLVED L+ +S+ L TV NNG+DA L+Q + A+++LD+ LP +D Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGID 56 Query: 72 GLDVLKRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPNYLAKPFELVLGADDY 131 G +VL+R+RA G+N PVLLLTARDTIPDRVHGLELGADDYLV Sbjct: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLV------------------ 98 Query: 132 LAKPFELVELEARVKALLRRAQGNEAVTIQCGALSFDTVSRMFTYGGAMLALTPREHAVL 191 KPF EL AR+KAL+RR+ A + G LS D ++ G + L+ RE VL Sbjct: 99 --KPFATPELVARIKALIRRSAPQPA-QLTVGGLSLDNATKRADIDGRKIELSLREWTVL 155 Query: 192 ETLITRA 198 E L+ A Sbjct: 156 EYLMQHA 162 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 21/184 (11%) Query: 14 MRILLVEDHVELSRWISKALQDAHLTVECANNGDDADSLLLTQEYALVILDLTLPKMDGL 73 MRILLVED +++ I L TVE +NG A S L++ Y L+ILD+ LP+ DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHA-SRRLSESYDLLILDVMLPQQDGF 59 Query: 74 DVLKRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPNYLAKPFELVLGADDYLA 133 +L++LR RG + PVL+LTA + +RV L+LGADDYLV Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLV-------------------- 99 Query: 134 KPFELVELEARVKALLRRAQGNEAVTIQCGALSFDTVSRMFTYGGAMLALTPREHAVLET 193 KPF+ EL+AR++ LLRR+ G + C LS D SR T G + LT RE +LE Sbjct: 100 KPFDFRELDARIRVLLRRSGGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEI 159 Query: 194 LITR 197 + R Sbjct: 160 IAAR 163 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 632,836 Number of extensions: 22774 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 30 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)