BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0002.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport pr...   181   1e-47

>gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  181 bits (459), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 100/124 (80%)

Query: 1   VQVISGDASEAASSAKDGKFRVLAVLSEQRLPGVLAEVPTAREQGFDVVWPIIRGFYMSA 60
           VQVISGDASEAA    +GK RVLAVLSEQRLPG L  VPTAREQG++VVWPIIRGFYMS 
Sbjct: 197 VQVISGDASEAAYFMAEGKVRVLAVLSEQRLPGPLQAVPTAREQGYEVVWPIIRGFYMSP 256

Query: 61  HVSDADYQRWVAVFDRTMATDEFKRQRATAGLYPFAMTGAPLTDYVRKVVEQYRKQSQEL 120
           HV +ADYQRWV  FDR MA   F  QR+T+GL PFAMTG+ L+ Y+ + V QYRKQSQEL
Sbjct: 257 HVPEADYQRWVRYFDRMMADPVFLAQRSTSGLQPFAMTGSQLSQYINQTVTQYRKQSQEL 316

Query: 121 GLVR 124
           GLVR
Sbjct: 317 GLVR 320


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 381,289
Number of extensions: 14159
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)