BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0012.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA...   305   2e-84
gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase su...   162   2e-41

>gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit beta [Herbaspirillum seropedicae
           SmR1]
          Length = 216

 Score =  305 bits (781), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 179/229 (78%), Gaps = 38/229 (16%)

Query: 1   MAWTRDEMAARARAKELQDGFYVNXRAAKELQDGFYVNLGIGLPTLVANHVPKDIEVWLQ 60
           MAWTRDEMAARA               AKELQDGFYVNLGIGLPTLVANHVP DIEVWLQ
Sbjct: 1   MAWTRDEMAARA---------------AKELQDGFYVNLGIGLPTLVANHVPSDIEVWLQ 45

Query: 61  SENGLLGIGPFPAEDKVDADLINAGKQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAM 120
           SENGLLGIGPFP ED+VD DLINAGKQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAM
Sbjct: 46  SENGLLGIGPFPTEDQVDPDLINAGKQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAM 105

Query: 121 QVSQQGDLANWMIPGKMVKGMGGAMDLVAGVGRVVVLMEHVAKGKDGSISQKILKQCNLP 180
           QVS +GDLANWMIPGKMVKGMGGAMDLVAGVGRVVVLMEHVAK KDGS S+KIL  CNLP
Sbjct: 106 QVSAKGDLANWMIPGKMVKGMGGAMDLVAGVGRVVVLMEHVAKAKDGSTSKKILNDCNLP 165

Query: 181 -----------------------XKLIELATGVSKEDVIANTEAELDVS 206
                                   KLIELA+GV+KE+VI  TEA LDVS
Sbjct: 166 LTGVGVVNRIITDLGVIDVTPGGLKLIELASGVTKEEVIEKTEAPLDVS 214


>gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase
           subunit B [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  162 bits (411), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 26/205 (12%)

Query: 3   WTRDEMAARARAKELQDGFYVNXRAAKELQDGFYVNLGIGLPTLVANHVPKDIEVWLQSE 62
           +TR+E+AAR                A+++ +G YVNLGIGLPT VAN++P D E++L SE
Sbjct: 4   FTREEIAARV---------------AQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSE 48

Query: 63  NGLLGIGPFPAEDKVDADLINAGKQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQV 122
           NG+LG+GP PA  + D DLINAGKQ VT + G ++F  ADSF M+RGG ++I +LGA QV
Sbjct: 49  NGVLGMGPAPAPGEEDEDLINAGKQPVTLLTGGAYFHHADSFAMMRGGHLDICVLGAFQV 108

Query: 123 SQQGDLANWMIPGK-MVKGMGGAMDLVAGVGRVVVLMEHVAKGKDGSISQKILKQCNLPX 181
           S +GDLANW       +  +GGAMDL  G  +V V+M+H  K  +     K+++ C+ P 
Sbjct: 109 SAKGDLANWHTGAPDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGE----SKLVEACSYPL 164

Query: 182 KLIELATGVSKEDVIANTEAELDVS 206
                 TG+   + I    A +DV+
Sbjct: 165 ------TGIGCVNRIYTDLAVIDVT 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,317
Number of extensions: 26194
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)