BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0011.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA...   279   7e-77
gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase su...   162   8e-42

>gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit alpha [Herbaspirillum seropedicae
           SmR1]
          Length = 231

 Score =  279 bits (714), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 144/156 (92%), Positives = 153/156 (98%)

Query: 1   MIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFTKTGVGTLVAEGKE 60
           MIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFTKTGVGTLVAEGKE
Sbjct: 74  MIASYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFTKTGVGTLVAEGKE 133

Query: 61  IREFDGARYVMERSLVADISLVKAQKADRAGNLIFNKTARNFNPNVAMAGKITIVEVEEL 120
           +REFDG RYVMERSLVAD+SLVKA KAD+AGNL+FNKTARNFNPNVAMAGK+T+VEVEEL
Sbjct: 134 VREFDGERYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPNVAMAGKVTVVEVEEL 193

Query: 121 VDIGELDPDQIHTAGIFVHRIVVNATPEKRIEQRTV 156
           V++G+LDPDQIHT GIFVHRIVVNATPEKRIEQRTV
Sbjct: 194 VEVGQLDPDQIHTPGIFVHRIVVNATPEKRIEQRTV 229


>gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  162 bits (411), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 102/135 (75%)

Query: 8   ENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFTKTGVGTLVAEGKEIREFDGA 67
           +++ F+  Y +GE+ELE TPQG LAE++RA GAGI  FF+ TG GT++AEGKE RE +G 
Sbjct: 83  DSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGFFSPTGYGTMLAEGKETREINGR 142

Query: 68  RYVMERSLVADISLVKAQKADRAGNLIFNKTARNFNPNVAMAGKITIVEVEELVDIGELD 127
            YV+E  + AD +L+KA + DR GNL++ KTARNF P +AMA K TI +V E+V++G+LD
Sbjct: 143 HYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCTIAQVSEVVELGQLD 202

Query: 128 PDQIHTAGIFVHRIV 142
           P+ I T GIFV RIV
Sbjct: 203 PENIVTPGIFVQRIV 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 482,454
Number of extensions: 19340
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)