BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0010.p
         (126 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312327|ref|YP_003776419.1| transmembrane protein [Herbaspi...   194   2e-51

>gi|300312327|ref|YP_003776419.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score =  194 bits (493), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 105/119 (88%)

Query: 8   NQELVFDARLQSAKDLAWWLYIFHGLSLVLSLGMLSWLPLIVNYIKRGDAADTFVYSHHR 67
           NQELVFD + Q+ +DL WWLY+ H + LV SLGMLSWLPLIVNY+KRGD  DTF+YSHHR
Sbjct: 2   NQELVFDPQTQTGRDLVWWLYLAHAICLVFSLGMLSWLPLIVNYLKRGDVRDTFLYSHHR 61

Query: 68  WQIRSFWWYLFWMFAGGVIWMTLVGIPLAVLIWSLAWIWKAYRIIKGWLDLNDNKAMPV 126
           WQIRSFWWYLFW+FAGG +W+T++GIPLAVL+++LAWIWKAYR+IKG+LDL DNK MP 
Sbjct: 62  WQIRSFWWYLFWLFAGGALWLTVIGIPLAVLVFTLAWIWKAYRLIKGFLDLQDNKPMPT 120


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.516 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 407,367
Number of extensions: 14737
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,264,745
Effective search space: 64501995
Effective search space used: 64501995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)