BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0008.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312328|ref|YP_003776420.1| phosphoserine phosphatase [Herb...   389   e-109

>gi|300312328|ref|YP_003776420.1| phosphoserine phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  389 bits (998), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/269 (73%), Positives = 223/269 (82%), Gaps = 8/269 (2%)

Query: 1   MNLILQGLN---TNRDDVDAIIALA--QPQRVVDI---NAHAWRCEGVIPSAALKTQIDA 52
           MNLILQ       +   ++AI ALA    +R+ D    +A  WR  GV  + ALK  +DA
Sbjct: 7   MNLILQAPKQHAVSSSAIEAIAALAGGDVERISDARVPDADVWRVAGVSLNEALKASVDA 66

Query: 53  VCLARQVDYAFIEAGRTLKDFKLVAMDMDSTLITIECIDEIADMQGLKPQVSEITEAAMR 112
            CL  ++DYAFI+A R L DF+LVAMDMDSTLITIECIDEIADMQGLKPQV+EITEAAMR
Sbjct: 67  ACLQARLDYAFIDADRKLADFRLVAMDMDSTLITIECIDEIADMQGLKPQVAEITEAAMR 126

Query: 113 GEIEFNESLTRRVALLKGLDAGALQRVYDERLELSLGAEKMLQAIQAVGIKTLLVSGGFT 172
           GEIEFNESLTRRVALLKGLDAGALQRVYDERL+LS GAE ML+A+QA G+KTLLVSGGFT
Sbjct: 127 GEIEFNESLTRRVALLKGLDAGALQRVYDERLQLSPGAENMLKAVQAAGLKTLLVSGGFT 186

Query: 173 FFTDRMKTRLGLDYTHSNELEIVDGKLTGKVLGGIVNAEEKRLTVERVCAELGVPTSQAI 232
           FFTDRMK RL LDYTH+N LE+VDGKLTGKV+GGIVNA+EKR TVERVC E+G   +QAI
Sbjct: 187 FFTDRMKARLNLDYTHANTLEVVDGKLTGKVVGGIVNADEKRATVERVCREIGAEPTQAI 246

Query: 233 VMGDGANDLKMMGVSGLSVAFRAKPVVRA 261
           VMGDGANDL+MMG+SGLSVAFRAKPVVRA
Sbjct: 247 VMGDGANDLRMMGISGLSVAFRAKPVVRA 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 888,036
Number of extensions: 34856
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)