BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0240.0007.p (355 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [... 619 e-178 gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease ... 63 3e-11 gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC trans... 55 9e-09 >gi|300313815|ref|YP_003777907.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 603 Score = 619 bits (1595), Expect = e-178, Method: Compositional matrix adjust. Identities = 316/354 (89%), Positives = 335/354 (94%) Query: 1 LSAPFFAPVKTLTLDSYRFIFDDPDFRQAFVNGFYLASGLALIAVPLGGMLAFLMVRTDL 60 LSAPFFAPVK LT DSYRFIFDDPDFRQAFVNG LA+GLALIAVPLGGMLAFLMVRTDL Sbjct: 49 LSAPFFAPVKELTFDSYRFIFDDPDFRQAFVNGLTLATGLALIAVPLGGMLAFLMVRTDL 108 Query: 61 PGRAWIAPMLLVPIFVSPMVIAFGYVVSMGPVGFYTVWVRNLLSVVGFEGDPWNVYSFPA 120 PGR++IAP L+VPIFVSPMVI FGYVVSMGPVGFYTVWV+NLLSV GFEGDPWN+YSF + Sbjct: 109 PGRSFIAPALMVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTS 168 Query: 121 IVVIAGLTHVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGV 180 IV+IAGLTHVPHVYLYASAAL+SLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGV Sbjct: 169 IVIIAGLTHVPHVYLYASAALRSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGV 228 Query: 181 LVFFLGFEVFGLVLVLGDPEGHLVLATYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVM 240 LVFFLGFEVFGLVLVLGDPEGHLVL TYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVM Sbjct: 229 LVFFLGFEVFGLVLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVM 288 Query: 241 LQRWLLKSANKYVSIKGKGARQKALPLGKWRWIAFTLIAFWLLFTVVVPLSGIALRTFVS 300 LQRWLL+SANKYV+IKGKGARQKALPLGKWRW+AF LIA WLLFTV++PLSGI LRTFVS Sbjct: 289 LQRWLLRSANKYVAIKGKGARQKALPLGKWRWVAFVLIAGWLLFTVIIPLSGIGLRTFVS 348 Query: 301 HWGDGVRLMEVLTLQNFRDVWSQPSLVRGIVNTVLIGVIGGAFAVVCYSAIALA 354 HWGDGV L+EVLT +N +VW QPSLVRGI+NTVLIGVIGGA AV CY+AIALA Sbjct: 349 HWGDGVSLLEVLTFENLLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALA 402 >gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 38/264 (14%) Query: 14 LDSYRFIFDDPDFRQAFVNGFYLASGLALIAV----PLGGMLAFLMVRTDLPGRAWIAPM 69 LD+YR I DPD+ AF N + I + P+G +LA L L G + Sbjct: 50 LDNYRTILFDPDWSAAFWNAMWNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTL 109 Query: 70 LLVPIFVSPMVIAFGYVVSMGP---VGFYTVWVRNLLSVVGFEG--DPWNVYSFPAIVVI 124 + +P +S ++I F + + + P VG LL VG PW A++ + Sbjct: 110 IFLPTLLSVVIIGFIWQLILSPLWGVG------EKLLGTVGLADWFAPWLGQESTALLTL 163 Query: 125 AGLT-----HVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSG 179 + ++ +P + +YA AL ++ +V EAA GAS +++ + LP+I P L Sbjct: 164 SLISVWQYVGIPMMLIYA--ALLAVPEEVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVT 221 Query: 180 VLVFFLGFEVFGLVL-----VLGDPEGHLVLATYLYK----LTNKLGTPSYHLMAAVA-- 228 +L F F F L+ + G +L TY Y+ ++G+P+ + AAVA Sbjct: 222 ILTFVANFNAFDLIYSVKGALAGPNYASDLLGTYFYRTFFGYQAQIGSPT--MGAAVATL 279 Query: 229 ---VCLVAVTMPLVMLQRWLLKSA 249 V L V V++QR L + A Sbjct: 280 MFLVILGGVGAYFVLVQRRLTRYA 303 >gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 25/244 (10%) Query: 8 PVKTLTLDSYRFIFDDPDFRQAFVNGFYLASGLALIAVPLGGMLAFLMVRTDLPGRAWIA 67 P+K+ +L Y +F D+ +A N F +A +IA LG + A + + D G+ Sbjct: 54 PIKSFSLRWYENLFSSDDWVRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKG--- 110 Query: 68 PMLLVPIFVSPMVIAFGYVVSMGPVGFYTVWVRNLLSVVGFEGDPWNVYSFPAIVVIAGL 127 +L+ I +SPM++ V + F + + + S+ +++ Sbjct: 111 --ILMAILISPMIVPVVVVGVGVYLFFARIGLSD---------------SYLGLILAHAA 153 Query: 128 THVPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMIMPALAYSGVLVFFLGF 187 P V A L+ ++ A+ GASPL+ V+LP+I P L + F F Sbjct: 154 LGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVIAPGLISGALFAFATSF 213 Query: 188 EVFGLVLVLGDPEGHLVLATYLYKLTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLK 247 + L L + PE L ++ +P+ +AA+A L+ + L++ W L+ Sbjct: 214 DEVVLTLFVAGPE-QATLPRQMFAGIKDNISPT---IAALATILIIFSTCLLLALEW-LR 268 Query: 248 SANK 251 NK Sbjct: 269 GRNK 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,103,464 Number of extensions: 46038 Number of successful extensions: 242 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 12 Length of query: 355 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 269 Effective length of database: 1,212,660 Effective search space: 326205540 Effective search space used: 326205540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)