BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0004.p
         (799 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312329|ref|YP_003776421.1| transcription-repair ATP-depend...  1070   0.0  
gi|300313816|ref|YP_003777908.1| Fe3+ ABC transporter periplasmi...   326   5e-90

>gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent
           coupling factor [Herbaspirillum seropedicae SmR1]
          Length = 1145

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/599 (85%), Positives = 549/599 (91%), Gaps = 6/599 (1%)

Query: 14  RMLTVVVANATDAQRLLAEIPWFQRRVEGGEGESALRCHLLPDWETLPYDAFSPHQDLVS 73
           RML VVVA ATDAQRLLAEIPWFQ      EGE  LRCHLLPDWETLPYDAFSPHQDLVS
Sbjct: 42  RMLAVVVAGATDAQRLLAEIPWFQ----PSEGER-LRCHLLPDWETLPYDAFSPHQDLVS 96

Query: 74  ERLATLYEVQNGQCDVLIVPATTALLRMAPPGFLAAYTFFFKQGEKLDEARLKSQLTLAG 133
           ERLATLYEVQ+GQCD+LIVPATTALLRMAPP FLAAYTFFFKQGEKLDE +LKSQLTLAG
Sbjct: 97  ERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAG 156

Query: 134 YTHVTQVMSPGEYSVRGGLIDIFPMGSALPYRLDLFGDTIETIRTFDADTQRSLYPVREV 193
           YTHV QVMSPGEYSVRGGLIDIFPMGS LPYRLDLFGDTIETIRTFDADTQRSLYPV EV
Sbjct: 157 YTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEV 216

Query: 194 RLLPGREFPMDEASRTSFRSRWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETA 253
           RLLPGREFPMDEASR +FR+RWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETA
Sbjct: 217 RLLPGREFPMDEASRLAFRNRWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETA 276

Query: 254 TLFRYLPEDGMFATVGDIDQAIKRFWSDTRSRHNFLKADRERPVLAPEQVFLTDEDFFTL 313
           TLF+YLP + MFATVGDI+QAIKRFWSDTRSR NFL ADRERPVL P+ ++L DEDFFTL
Sbjct: 277 TLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTL 336

Query: 314 VKPYGRWVLQTDDAPSALSAAIPNVAVNRRIDDPLTNLRGYLLKTGKRVMLCAESNGRRE 373
           +KP+ RWVL+TDDAPSA+SA +PN+AVNRR DDPL NLR +LLK  +RV++CAESNGRRE
Sbjct: 337 LKPHARWVLKTDDAPSAISAPLPNIAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRE 396

Query: 374 TLQQYFAEYDLHPALCDGYDSFLGNTEPLMLGVAPLHAGFELEQEQVAFITETELYAGSG 433
           TLQQYFAEYDLHP LC+ ++ FL + EPLMLGVAPLHAGF +    +A +TETELYAGSG
Sbjct: 397 TLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVAPLHAGF-VTAAGLALVTETELYAGSG 455

Query: 434 RRVGRKKQENVTQVEHMVRDLSELKIGDPVVHANHGIGRYMGLLSMDLGEGETEFLHLEY 493
           RRVG +KQ+  T VE+MVRDLSELKIGDPVVH++HGIGRYMGL+SMDLGEGETEFLHLEY
Sbjct: 456 RRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEY 515

Query: 494 AKETKLYVPVSQLHVIARYSGASPEDAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYA 553
           AKETKLYVPVSQLHVI+RYSGASPEDAPLH+LGSGQWEKAKRKAAQQ+RDTAAELLNLYA
Sbjct: 516 AKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYA 575

Query: 554 RRALRQGHAFQYSARDYETFAESFGFEETPDQAAAINAVIGDMTSGKPMDRLICGDVGF 612
           RRALRQGHAFQYSA DYE FA+SFGFEET DQAAAINAVI DMT GKPMDRLICGDVGF
Sbjct: 576 RRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGF 634


>gi|300313816|ref|YP_003777908.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  326 bits (835), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 173/202 (85%)

Query: 597 TSGKPMDRLICGDVGFVGFSLITHDLXKSGVGFSLITHDLKLNPQFWDFAKALGGVAVRV 656
           TS     RL+          + T+D+ KSGVGFSL+T+DLK NPQFWDFAKA+GGVA RV
Sbjct: 167 TSHAEFTRLLASKQDKFKNKVTTYDIEKSGVGFSLMTYDLKYNPQFWDFAKAMGGVAARV 226

Query: 657 QSSTGTMLERISSGENLIGYNILGPYALTRAKKDPSIGISFTKDYNLVLSRVIFINKSAK 716
           QSSTGTMLERISSGENLIGYNILGPYAL RAKKDPSIG++FTKDYNLVLSRVIFINK+ K
Sbjct: 227 QSSTGTMLERISSGENLIGYNILGPYALVRAKKDPSIGVAFTKDYNLVLSRVIFINKAGK 286

Query: 717 NINAGKLWLDYILSKRGQTIIANDAQLFAIRGDVVGSTTSAELTKQLGAALKPMPVNTDL 776
           N NA KLW+DYILSKRGQTIIANDAQLFAIR DV G+TTSAELTKQLGAALKPMPV+T+L
Sbjct: 287 NTNAAKLWVDYILSKRGQTIIANDAQLFAIRSDVSGATTSAELTKQLGAALKPMPVSTEL 346

Query: 777 LEYLDQTKRLAFLKQWKDAAGK 798
           LEYLDQ KRL FLKQWK+A  K
Sbjct: 347 LEYLDQKKRLDFLKQWKEATKK 368


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,530,174
Number of extensions: 110465
Number of successful extensions: 319
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 2
Length of query: 799
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 706
Effective length of database: 1,179,515
Effective search space: 832737590
Effective search space used: 832737590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)