BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0240.0002.p
         (444 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312333|ref|YP_003776425.1| malate synthase [Herbaspirillum...   865   0.0  

>gi|300312333|ref|YP_003776425.1| malate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 528

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/444 (93%), Positives = 426/444 (95%), Gaps = 16/444 (3%)

Query: 1   MVINAFNSGADSYMTDFEDSNSPVWDNQISGQINLFDAIRRTISLESNGKSYKLNEKIAT 60
           MVINAFNSGADSYMTDFEDSNSPVWDNQISGQINL+DAIRRTISLESNGKSYKLN+KIAT
Sbjct: 101 MVINAFNSGADSYMTDFEDSNSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIAT 160

Query: 61  LVVRPRGWHLDEKHVTIDGKRISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEA 120
           LVVRPRGWHLDEKHVT+DGKRISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEA
Sbjct: 161 LVVRPRGWHLDEKHVTLDGKRISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEA 220

Query: 121 RLWNDIFVMAQNEIGLPQGTIKATVLIETITAAFEMEEILYELREHSSGLNAGRWDYIFS 180
           RLWNDIFVMAQNEIGLPQGTIKATVLIETITAAFEMEEILYELREHS+GLNAGRWDYIFS
Sbjct: 221 RLWNDIFVMAQNEIGLPQGTIKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFS 280

Query: 181 CIKKFKNDKDFCLADRAKVTMTAPFMRSYALLLLKTCHKRGAPAIGGMSALIPIKNDPEK 240
           CIKKFKNDKDFCLADRAKVTMT+PFMR+YALLLLKTCHKRGAPAIGGMSALIPIKNDPEK
Sbjct: 281 CIKKFKNDKDFCLADRAKVTMTSPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEK 340

Query: 241 NAIAMQGIINDKRRDATDGYDGGWVAHPGLVEPSMKEFVAVLGDKPNQFEKQRPDPLFDV 300
           NAIAMQGIINDKRRDATDGYDGGWVAHPGLVE SMKEFVAVLGDKPNQFEKQRPD     
Sbjct: 341 NAIAMQGIINDKRRDATDGYDGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPD----- 395

Query: 301 KAADLLNFXGDFDVKAADLLNFQPETPITEAGLRYNINVGIHYLGAWLAGNGCVPIHNLM 360
                       DVKAADLLNFQPETPITEAGLRYNINVGIHYLGAWLAGNGCVPIHNLM
Sbjct: 396 -----------VDVKAADLLNFQPETPITEAGLRYNINVGIHYLGAWLAGNGCVPIHNLM 444

Query: 361 EDAATAEISRAQVWQWIRSSKGNLEDGRKVTADMVRAMIPEELAKVKEVAGNGPTYDRAA 420
           EDAATAEISRAQVWQWIRS+KGNLEDGRKVTADMVRAMIPEELAKVK+VAG+GPTYDRAA
Sbjct: 445 EDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVRAMIPEELAKVKQVAGDGPTYDRAA 504

Query: 421 KIFEDMSTSETFAEFLTLPLYEEI 444
           KIFE+MSTSETFAEFLTLPLYEEI
Sbjct: 505 KIFEEMSTSETFAEFLTLPLYEEI 528


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,400,781
Number of extensions: 59658
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,203,190
Effective search space: 428335640
Effective search space used: 428335640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)