BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0238.0015.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein...    88   8e-19

>gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1047

 Score = 87.8 bits (216), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 73/114 (64%), Gaps = 1/114 (0%)

Query: 49  FNLSAFGVRERAVTLFLIIAIAAAG-AAFIKLGRAEDPSFTVKIMTVTAIWPGATAREMQ 107
           FNLSA+ ++ +A+  F++  +   G  ++ +L ++EDP FT K+M +   WPGATAR++Q
Sbjct: 7   FNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQ 66

Query: 108 QQVGDRLEKRLQELEYYDRVETSARPGLITMKLFLKDSTLPALVPEQFYQARKK 161
           +Q+ DR+ ++LQE    D + + +R G   +   +KD+   + VP+ +YQ RKK
Sbjct: 67  EQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK 120


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 726,610
Number of extensions: 26185
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)