BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0238.0009.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...    83   1e-17
gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...    66   2e-12

>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 16  PSVSFREAFLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNYCMLLPGPE 75
           P  + RE FL +L LG  +FGG    + + H+ +VE R+W+++  F+  L  C  LPG  
Sbjct: 25  PVPTTRELFLGFLGLGMTAFGG---ALPLAHRMIVERRKWLTDPEFVELLGLCQFLPGGN 81

Query: 76  AQQLATYIGWLMHRTWGGIIAGV--LFVFPSLLILITLSWLYIAFGHLPIVEGLFYGIKP 133
              L+  +G +  R W G +AGV  L   PS +++I L  +Y  F H P V+ LF G+  
Sbjct: 82  IINLSVALG-MKFRGWKGALAGVTGLIAVPS-MVVILLGMIYQHFQHDPNVKHLFAGLAA 139

Query: 134 AVTAIVLQAAHRIGSRALKNNVLWAIAAVSFVAIFALNVPF 174
           A   +++Q A +I     KN VL  +A V FVAI  L +P 
Sbjct: 140 AAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPL 180


>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 22  EAFLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNYCMLLPGPEAQQLAT 81
           E FL +L+LG  SFGGPA  +     E V  R W+SE  +   +  C  LPGP + Q+  
Sbjct: 94  EVFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGM 153

Query: 82  YIGWLMHRTWGGIIAGVL-FVFPSLLILITLS 112
            IG ++   +GG +A  L F  PS L+L+ L+
Sbjct: 154 AIG-VLRAGYGGALAAWLGFTLPSALLLMGLA 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 691,797
Number of extensions: 27633
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)