BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0238.0007.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313066|ref|YP_003777158.1| drug/metabolite transporter (DM...   435   e-123

>gi|300313066|ref|YP_003777158.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  435 bits (1118), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/289 (82%), Positives = 268/289 (92%)

Query: 62  FLVCVVLAICIWGGNWPVMKFGSQYIPPLWFAASRFVSAAMLSFAIAAAIGKLRLPRREE 121
           FLVCVVLAICIWGGNWPVMKFGSQ+IPPLWFAASRF+SAA+LSF IA  +GKLRLP R+E
Sbjct: 31  FLVCVVLAICIWGGNWPVMKFGSQFIPPLWFAASRFLSAAILSFVIAVVLGKLRLPTRQE 90

Query: 122 WPVVLGVGILQMGLFTALVTGALHFVMPGRASLIAYATSVWVVPGAALVLKQRLSGQQRL 181
           WPVV+GVG+LQMGLFTALVTGALHFVMPGRASLIAYATS+WVVPGAALVLKQ+LS QQ L
Sbjct: 91  WPVVVGVGVLQMGLFTALVTGALHFVMPGRASLIAYATSIWVVPGAALVLKQKLSPQQSL 150

Query: 182 ATMFSYLGMAIVVLPAVLHADLHGMIGYLMLAAASLSWAINILQIKSTKGVRLDFDLLPW 241
           AT+ SY GMA++VLPA+LHADLH MIGYLML  ASLSWA+NILQIK + GV+LDF LLPW
Sbjct: 151 ATVCSYAGMAVIVLPALLHADLHSMIGYLMLGVASLSWAMNILQIKMSPGVKLDFALLPW 210

Query: 242 QTLVAALPLTVLALAVEGAPVFLAEPHSWYVIAYTGPLATALTFLIVLQMTQRLSPVTVS 301
           QTLVAALPL++LALAV+GAP FLA+PH+W VIAYTGPLATALTFLIVLQMTQRLSPVTVS
Sbjct: 211 QTLVAALPLSLLALAVDGAPSFLADPHAWGVIAYTGPLATALTFLIVLQMTQRLSPVTVS 270

Query: 302 VCMLGVPVVGITLSSLIFGEALSADLLMGVALICLGLLIPALPRMSWRR 350
           VCMLGVPVVG+TLSSL+FGE LS+DL++G+ L+CLGL++PALP +  RR
Sbjct: 271 VCMLGVPVVGLTLSSLVFGERLSSDLVLGMGLLCLGLVLPALPSLGLRR 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,025,107
Number of extensions: 38171
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)