BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0238.0005.p (296 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [H... 127 1e-30 gi|300310813|ref|YP_003774905.1| NADPH:quinone oxidoreductase [H... 117 1e-27 gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H... 107 1e-24 gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H... 93 2e-20 gi|300310417|ref|YP_003774509.1| zinc-containing alcohol dehydro... 82 5e-17 >gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 342 Score = 127 bits (318), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 130/258 (50%), Gaps = 27/258 (10%) Query: 3 NVRALILTKYGGPSAIRISSIEAPTAGNGKGQVLVRVQAAGVNGLDWKVREGYVRDAFPL 62 ++A+ +GGP +R +AP G+VLVRV A G+N DW +REGY Sbjct: 5 TMKAIQQHAFGGPEVLRYE--DAPVPELQPGEVLVRVHAVGLNPPDWYLREGYKMLPPEW 62 Query: 63 Q----LPTVLGIELAGVVEAVGAGVTRLRKGDRVM-------GPLGGLGAYADLVTVDEA 111 Q P +LG +++GVVEAV V GD V G GG AYA V+V + Sbjct: 63 QPTVAFPLILGTDISGVVEAVADDVKDFAVGDEVYSMVRFPSGLAGGSRAYAQYVSVAAS 122 Query: 112 NLSLMPESMSFVDAAALPVASVAAWQSL-----NFAGPVR---------AGQRILVHGAA 157 ++L P+ +S AAA P++ + AWQ + + P++ + ++V+GAA Sbjct: 123 EIALKPQRISHAQAAAAPMSLLTAWQFMIELGHDIQNPLQPHRHEPVPLKDKTVVVNGAA 182 Query: 158 GGLGGFAVQYAHQAGAVVFATALEADADYVRDLGADHVIAYDKEQFEATANDIDLVLDYV 217 GG+G FA+Q A GA V A ++RDLGAD I Y + E +D+DLV+D V Sbjct: 183 GGVGHFALQLAKWKGARVIAIGSGGHEAFLRDLGADEFIDYTRSAAEDVLSDVDLVIDAV 242 Query: 218 GGEVLNRSWSVLADDGAI 235 GG R L GA+ Sbjct: 243 GGPASGRFLRTLKRGGAL 260 >gi|300310813|ref|YP_003774905.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 309 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 7/235 (2%) Query: 4 VRALILTKYGGPSAIRISSI-EAPTAGNGKGQVLVRVQAAGVNGLDWKVREGYVRDAFPL 62 +RA+ +YG PS + + + E P G V V +QAAGV +D K+R G ++ L Sbjct: 1 MRAICYHQYGPPSVLHLCDLDEQPLP---PGHVRVAMQAAGVAPVDTKLRAGRLQHLVAL 57 Query: 63 QLPTVLGIELAGVVEAVGAGVTRLRKGDRV--MGPLGGLGAYADLVTVDEANLSLMPESM 120 LP V G + AGV+ A+G GV L+ G+ V M + G G + + + + P+ + Sbjct: 58 DLPKVPGRDGAGVITALGEGVHTLQVGEAVCVMPSMAGRGTTLAELVLPQEQVVRKPDVL 117 Query: 121 SFVDAAALPVASVAAWQSLNFAGPVRAGQRILVHGAAGGLGGFAVQYAHQAGAVVFATAL 180 S AAAL + +AW +L P+ AG ++ +H +G +G VQ A GA V A+ Sbjct: 118 SMQQAAALLQPACSAWIALMQTAPIAAGMKVFIHAGSGAVGSLMVQLAAHLGAEVTASCR 177 Query: 181 EADADYVRDLGADHVIAYDKEQFEATANDIDLVLDYVGGEVLNRSWSVLADDGAI 235 ++ +YV LGA V+AYD+++ D D+V+D VGG ++S+ +L G + Sbjct: 178 SSNVEYVAALGASRVLAYDRDEL-GRVRDQDVVIDLVGGAAHDQSYRMLRRGGQL 231 >gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 325 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 4 VRALILTKYGGPSAIRISSIEAPTAGNGKGQVLVRVQAAGVNGLDWKVREGYVRDAFPLQ 63 +RA+ + ++GGP ++ + E P G+VL++V AAGVN D R G P Sbjct: 1 MRAIEIKEFGGPEVLQ--ACERPVPELKAGEVLIKVHAAGVNRPDVFQRTGNY--PVPPG 56 Query: 64 LPTVLGIELAGVVEAVGAGVTRLRKGDRVMGPLGGLGAYADLVTVDEANLSLMPESMSFV 123 + G+E+AG + A G + + GD V + G G YA+ A +P+ +S + Sbjct: 57 ASDLPGLEVAGEIVAGDLGDSGFKLGDLVCALVQG-GGYAEFCAAPLAQCLPVPKGLSAL 115 Query: 124 DAAALPVASVAAWQSLNFAGPVRAGQRILVHGAAGGLGGFAVQYAHQAGAVVFATALEAD 183 +AAALP W ++ G + + +LV G + G+G A+Q A G VFATA A+ Sbjct: 116 EAAALPENYFTVWSNVFDRGQLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAE 175 Query: 184 -ADYVRDLGADHVIAYDKEQFEATAND------IDLVLDYVGGEVLNRSWSVLADDG 233 +LGA+ I Y E FEA + +D++LD VGG+ L R LADDG Sbjct: 176 KCRACEELGAERAINYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIKALADDG 232 >gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 324 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 110/232 (47%), Gaps = 13/232 (5%) Query: 5 RALILTKYGGPSAIRISSIEAPTAGNGKGQVLVRVQAAGVNGLDWKVREGYVRDAFPLQL 64 +A+ ++K GGP + +E G G+V +R A G+N +D R G +P L Sbjct: 3 KAIRMSKTGGPEVMEYVDVE--VGEPGAGEVRIRHAAVGLNFIDCYFRAGL----YPQPL 56 Query: 65 PTVLGIELAGVVEAVGAGVTRLRKGDRVMGPLGGLGAYADLVTVDEANLSLMPESMSFVD 124 P LG E AG +EAVGAGV+ + GDRV GAYA+ + L +P+++SF Sbjct: 57 PAGLGQEAAGTIEAVGAGVSGFKVGDRVAYAGRPNGAYAEERVMPADILVKLPDAISFDT 116 Query: 125 AAALPVASVAAWQSLNFAGPVRAGQRILVHGAAGGLGGFAVQYAHQAGAVVFAT-ALEAD 183 AAA+ + + L V+ G IL H AAGG+G A Q+A G + T + + Sbjct: 117 AAAMMLQGMTVQYLLRQTYAVQPGDTILFHAAAGGIGLIACQWARALGVNLIGTVSSDEK 176 Query: 184 ADYVRDLGADHVIAYDKEQFEATAND------IDLVLDYVGGEVLNRSWSVL 229 A GA HVI Y E F + + +V D +G + S L Sbjct: 177 AALALQHGAAHVINYKTENFVERVKELTGGRGVQVVYDSIGKDTFLGSLDCL 228 >gi|300310417|ref|YP_003774509.1| zinc-containing alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 333 Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 105/201 (52%), Gaps = 20/201 (9%) Query: 15 PSAIRISSIEAPTAGNGKGQVLVRVQAAGVNGLDWKVREGYVRDAFPLQLPTVLGIELAG 74 P A+ +++ PT G + +LV V+A VN +D K+R ++A VLG +++G Sbjct: 16 PDALIETTLPDPTPG--EHDLLVEVKAISVNPVDTKIR-ASAKEA------RVLGWDVSG 66 Query: 75 VVEAVGAGVTRLRKGDRVM--GPLGGLGAYADLVTVDEANLSLMPESMSFVDAAALPVAS 132 VV AVG VT GD V G + GA ++L VDE + P S+ DAAA+P+ + Sbjct: 67 VVRAVGPAVTLFAPGDEVFYAGSITRPGANSELHVVDERIVGRKPSSLGHADAAAIPLTA 126 Query: 133 VAAWQSLNFAGPVRA----GQRILVHGAAGGLGGFAVQYAHQAGAV-VFATALEAD-ADY 186 + AW+ L V GQ +L+ GAAGG+G Q A + + V TA + A + Sbjct: 127 ITAWELLFDRVAVAEGGGQGQHLLIIGAAGGVGSMLTQLARKLTQLTVIGTASRPETAHW 186 Query: 187 VRDLGADHVIAYD---KEQFE 204 V +LGA HVI + K Q E Sbjct: 187 VGELGAHHVIDHSQPLKPQLE 207 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 957,035 Number of extensions: 39553 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 5 Length of query: 296 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,217,395 Effective search space: 256870345 Effective search space used: 256870345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)