BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0237.0002.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...   175   9e-46
gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...   137   3e-34

>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  175 bits (443), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/96 (91%), Positives = 92/96 (95%)

Query: 1   VTDPVAAQLVKDWKPSGTNVTGVSDLLELEKQVDLIKRVVPAAKRVGMVYNPGEANSAVV 60
           VTDPVAAQLVKDWK SGTNVTGVSDLLEL+KQVDLIKRVVP AKRVGMVYNPGEANSAVV
Sbjct: 120 VTDPVAAQLVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVV 179

Query: 61  VKAMKELLGKSGMTLVEAAAPRTVDVGAAAKSLIGK 96
           VKA+KELL KS MTLVEAAAPR+VDVG+AAKSLIGK
Sbjct: 180 VKALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGK 215


>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  137 bits (344), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 81/96 (84%)

Query: 1   VTDPVAAQLVKDWKPSGTNVTGVSDLLELEKQVDLIKRVVPAAKRVGMVYNPGEANSAVV 60
           + DP+AAQLVKDWKPSGTNVTG+S +L+  KQV++IKRVVP AKRVG+VYNPGEANS   
Sbjct: 124 IADPMAAQLVKDWKPSGTNVTGMSHMLDPVKQVEVIKRVVPEAKRVGVVYNPGEANSVSA 183

Query: 61  VKAMKELLGKSGMTLVEAAAPRTVDVGAAAKSLIGK 96
           +  +K  L K+G+TLVEAAAPR+VDV  AAKSLIGK
Sbjct: 184 LNNLKGELQKAGLTLVEAAAPRSVDVAPAAKSLIGK 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.126    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 314,907
Number of extensions: 11005
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 124 (52.4 bits)