BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0237.0001.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...   197   3e-52
gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...   159   9e-41

>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  197 bits (502), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 107/114 (93%)

Query: 1   VIVAIGTPSAQPLVASTKTIPIVYSGIADPIAAQLVKDWGPSGTNVTGLSHMLDPVKQVE 60
           VIVAIGTPSAQP+VA+TKTIPIVYS IADP+AAQLVKDW PSGTNVTG+SHMLDPVKQVE
Sbjct: 98  VIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLVKDWKPSGTNVTGMSHMLDPVKQVE 157

Query: 61  IIKKVLPTAKRIGIVYNPGESNSVSALNAIKAVLEKQGMTLVEAAAPRSVDVAP 114
           +IK+V+P AKR+G+VYNPGE+NSVSALN +K  L+K G+TLVEAAAPRSVDVAP
Sbjct: 158 VIKRVVPEAKRVGVVYNPGEANSVSALNNLKGELQKAGLTLVEAAAPRSVDVAP 211


>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  159 bits (403), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 94/111 (84%)

Query: 2   IVAIGTPSAQPLVASTKTIPIVYSGIADPIAAQLVKDWGPSGTNVTGLSHMLDPVKQVEI 61
           IVAI TPSAQ LVA+TK+IP+VYSG+ DP+AAQLVKDW  SGTNVTG+S +L+  KQV++
Sbjct: 95  IVAIATPSAQALVAATKSIPVVYSGVTDPVAAQLVKDWKASGTNVTGVSDLLELDKQVDL 154

Query: 62  IKKVLPTAKRIGIVYNPGESNSVSALNAIKAVLEKQGMTLVEAAAPRSVDV 112
           IK+V+P AKR+G+VYNPGE+NS   + A+K +L K  MTLVEAAAPRSVDV
Sbjct: 155 IKRVVPNAKRVGMVYNPGEANSAVVVKALKELLAKSNMTLVEAAAPRSVDV 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 468,599
Number of extensions: 15942
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)