BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0025.p
         (128 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312748|ref|YP_003776840.1| chromate transport protein [Her...   211   1e-56

>gi|300312748|ref|YP_003776840.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score =  211 bits (538), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/115 (86%), Positives = 112/115 (97%)

Query: 1   MIQTLIALGLIFSELSVLAFGGGNTILPEMQRQVVEVHHWMTAEDFSALFALGQAAPGPN 60
           M QTLIAL +IF++LSVLAFGGGNTILPEMQRQVVEVH WM+AEDFSALFALGQAAPGPN
Sbjct: 1   MSQTLIALVIIFTQLSVLAFGGGNTILPEMQRQVVEVHQWMSAEDFSALFALGQAAPGPN 60

Query: 61  LMIVTLVGWHVAGFYGMLVTTIAKFGPSSLVTILMLHVWERFKDRPWRRHVQSGL 115
           LM+VTLVGWHVAGF+GMLVT++AKFGPSS++TI+MLHVWERFKD+PWRRHVQ+GL
Sbjct: 61  LMVVTLVGWHVAGFWGMLVTSLAKFGPSSIITIIMLHVWERFKDKPWRRHVQAGL 115


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 433,155
Number of extensions: 17305
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,264,745
Effective search space: 67031485
Effective search space used: 67031485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)