BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0020.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312746|ref|YP_003776838.1| dihydrofolate reductase oxidore...   253   8e-69

>gi|300312746|ref|YP_003776838.1| dihydrofolate reductase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  253 bits (645), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 140/166 (84%), Gaps = 4/166 (2%)

Query: 6   SASGALCVIVATDSQNGIGINNTLPWHLPEDLAHFKRTTSGHPIIMGRKTFDSIGRPLPN 65
           ++SG L +IVATD  NGIGINNTLPW LPEDLAHFKRTTSGH I+MGRKTFDSIGRPLPN
Sbjct: 3   TSSGQLTLIVATDLNNGIGINNTLPWRLPEDLAHFKRTTSGHAILMGRKTFDSIGRPLPN 62

Query: 66  RRNIVITRNRDWSHAGVETVSSLQEAAVLVAGADAFIIGGAQIYAESLPLATRLIVTEIA 125
           RRNIVITRN  W H GVET  SLQEAA L AGA AFIIGGAQIYAE+LPLA RLI+T IA
Sbjct: 63  RRNIVITRNAGWQHDGVETAGSLQEAAALCAGAPAFIIGGAQIYAEALPLADRLIITRIA 122

Query: 126 QAFDCDAFFPAIDSKVWRETARETRHAESQGVAQGFDYAFVTYERR 171
           Q FDCDAFFPA+D +VW+ETARE  H+E+ G+    DYAFVTYERR
Sbjct: 123 QTFDCDAFFPALDQQVWQETAREEHHSETSGL----DYAFVTYERR 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 549,864
Number of extensions: 21772
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)