BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0012.p
         (152 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312743|ref|YP_003776835.1| membrane-fusion protein [Herbas...   219   8e-59
gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible...    65   3e-12

>gi|300312743|ref|YP_003776835.1| membrane-fusion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  219 bits (558), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 120/141 (85%)

Query: 1   VTRLHKGMTAYFTTPGYPGKRWAGKLRQIMLLPADDSGRQGKRAFYTVLFDVANPSRELM 60
           VTRL KGMTAYFTTPGYPGKRW+GKLRQIMLLP DDSGRQGK+AFYTV FDVANPSRELM
Sbjct: 254 VTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAFYTVFFDVANPSRELM 313

Query: 61  AGMTADVFFVLDKAERAITIPAALVVKPDNKGMQKLKVLHAGGKLETRDVRIGLRNADKA 120
           +GM+ADV+FVL +AE   TIP  LV KP   G Q +KV+ A GKLETR ++IG+R+ ++A
Sbjct: 314 SGMSADVYFVLARAEHVPTIPRTLVTKPGMDGTQTVKVVLADGKLETRKIKIGIRDNERA 373

Query: 121 QVLTGLAEGEQVLLPASVASS 141
           QVL+GL EGEQVLLPA+ A+S
Sbjct: 374 QVLSGLKEGEQVLLPANPAAS 394


>gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible
           efflux component [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 64.7 bits (156), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 70/162 (43%), Gaps = 23/162 (14%)

Query: 1   VTRLHKGMTAYFTTPGYPGKRWAGKLRQIMLLPADDSGRQG-----------------KR 43
           V R+  G   +FT  G P  R+   LR I   PA DS  Q                    
Sbjct: 238 VVRVKPGQPVFFTILGDPDHRYRTTLRAIE--PAPDSILQDDTSSSTTSITSSSSASSTA 295

Query: 44  AFYTVLFDVANPSRELMAGMTADVFFVLDKAERAITIPAALVVKPDNKGMQKLKVLHAGG 103
            +Y  L DV NP  +L   MT  V  VL +A  A+ +P+  +      G   ++VL   G
Sbjct: 296 IYYNGLLDVPNPDGKLRISMTTQVNIVLSEASNALVLPSTALGAKAADGSYTVRVLDDQG 355

Query: 104 KLETRDVRIGLRNADKAQVLTGLAEGEQV----LLPASVASS 141
           +   R VRIG+      Q++ G+  GE+V    +LP + ASS
Sbjct: 356 QAHERKVRIGINTNALVQIVEGVKAGERVVTGTVLPGAAASS 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,559
Number of extensions: 18302
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 75
Effective length of database: 1,255,275
Effective search space: 94145625
Effective search space used: 94145625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)