BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0010.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312740|ref|YP_003776832.1| thymidylate synthetase [Herbasp...   137   9e-34

>gi|300312740|ref|YP_003776832.1| thymidylate synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  137 bits (345), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 114/222 (51%), Gaps = 48/222 (21%)

Query: 6   DRTGTGTRSVFGHQMRFNLQEGFPLLTTKKLHIKSIVHELIWFLAGSTNIAYLKDNGVKI 65
           +RTG  T S+ G  MRF+LQ+GFP +TTK+L  KS+V EL  FL  + + A  +  G K+
Sbjct: 20  NRTGIRTLSIPGAMMRFDLQKGFPAVTTKRLAFKSVVGELCGFLRATRSAADFRALGCKV 79

Query: 66  WDEWADAEG------------NLGPIYGYQWRSWPA---PNGEH---------------- 94
           WD+ A+               +LGP+YG QWR WPA    +  H                
Sbjct: 80  WDQNANENADWLANPFRSGADDLGPVYGVQWRQWPAYKLIDAAHTTQIEAARSKGFAIVS 139

Query: 95  ---------------IDQIAQVVSQIRNNPDSRRLIVSAWNVADIPQMKLPPCHAFFQFY 139
                          +DQ+ + +  I NNP SRR++   WN A + ++ LP CH  +QF 
Sbjct: 140 SLQDEGVEKVLLYKAVDQLRECLDTIVNNPGSRRILFHGWNCAVLDEVALPACHLLYQFL 199

Query: 140 --VADGKLSCQLYQRSADIFLGVPFNIASYALLTHMVAQQTG 179
              + G++S  LY RS DI LG PFN+A  A L H+VA+ TG
Sbjct: 200 PNQSTGEISLCLYVRSNDIGLGTPFNLAEGAALLHLVARLTG 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,211
Number of extensions: 34132
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)