BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0008.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312639|ref|YP_003776731.1| choline dehydrogenase [Herbaspi...   266   1e-72
gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase [Herbas...   248   4e-67
gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like prot...   227   5e-61

>gi|300312639|ref|YP_003776731.1| choline dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  266 bits (680), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 155/219 (70%), Gaps = 2/219 (0%)

Query: 2   FDDFNGDNFDHGPHGFVGGAYISAMVTGGRPIGQSIVPP--DTPKWGSGWKKALKDNYLH 59
            DD N D FDHGP GF+GGA I  +  GGRPI Q+   P    P WGS WK +++D Y  
Sbjct: 375 MDDLNADQFDHGPLGFIGGASIRHVRYGGRPIKQAGTMPGEKVPSWGSEWKASVQDAYQR 434

Query: 60  SFNIGSEGSVMANRDNYLDLDPTYRDAYGLPLLRMTFDWKENEIRMTQYVTDRVVEVAKA 119
           +  IG  GSVMA RD YL LDPTYRDA G PLLR+T +WKENE +M  Y+  ++ +V +A
Sbjct: 435 TLTIGMSGSVMAYRDCYLSLDPTYRDANGQPLLRLTLNWKENEGKMLTYIASQMEKVGQA 494

Query: 120 MKPKLMHASATKSGEHYDVRPYQTTHTTGGAICGDRPDNSVINKYLQSWDVHNLFIMGAS 179
           M P+ +  +  K+G  +D R YQ+TH TGGAI G  P NSV+NKYLQSWDV N+F+ GA 
Sbjct: 495 MNPEKVVKAVRKTGSSWDTRVYQSTHLTGGAIMGTTPKNSVVNKYLQSWDVPNVFVYGAC 554

Query: 180 AFPQNWAYNPTGMVGALAYWSAAAIRERYLKNPGPLVQA 218
           AFPQN  YNPTG+V ALAY SA AIRE+YLKNPGPLVQA
Sbjct: 555 AFPQNMGYNPTGLVTALAYHSAKAIREQYLKNPGPLVQA 593


>gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  248 bits (632), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 116/216 (53%), Positives = 150/216 (69%)

Query: 3   DDFNGDNFDHGPHGFVGGAYISAMVTGGRPIGQSIVPPDTPKWGSGWKKALKDNYLHSFN 62
           DDFNGD+ DHGP GFVGG+ I    +G +PI    VP  TP+WG  WK+A+KD+YL++ +
Sbjct: 378 DDFNGDHMDHGPLGFVGGSPIWCNPSGSKPISGIAVPSGTPRWGRAWKQAVKDSYLNTMS 437

Query: 63  IGSEGSVMANRDNYLDLDPTYRDAYGLPLLRMTFDWKENEIRMTQYVTDRVVEVAKAMKP 122
               G+ M  RD Y+DLDP Y+DA+G PLLR TFDWK+N+IRM++YVTD+ V++A  +K 
Sbjct: 438 FDVHGANMVYRDVYVDLDPNYKDAFGQPLLRFTFDWKDNDIRMSRYVTDQAVKIAHELKA 497

Query: 123 KLMHASATKSGEHYDVRPYQTTHTTGGAICGDRPDNSVINKYLQSWDVHNLFIMGASAFP 182
           + +  +    G   D+R YQTTH  GG   G  P  SV+N+YLQSWDVHN+F +G+  F 
Sbjct: 498 REIKVTVKDFGAAPDLRSYQTTHWAGGVAMGTDPSTSVVNRYLQSWDVHNVFAVGSGVFA 557

Query: 183 QNWAYNPTGMVGALAYWSAAAIRERYLKNPGPLVQA 218
           Q   YNPTG   AL YWSA AIRE+YL +P PLVQA
Sbjct: 558 QGIGYNPTGAAVALTYWSARAIREQYLNDPRPLVQA 593


>gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 590

 Score =  227 bits (579), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 149/219 (68%), Gaps = 2/219 (0%)

Query: 1   VFDDFNGDNFDHGPH-GFVGGAYISAMVTGGRPIGQSIVPPDTPKWGSGWKKALKDNYLH 59
           +F+D +  NFD G   GF+GGA I +    G PIG ++ PP TP WG GWK+ + D Y H
Sbjct: 373 MFNDISPGNFDDGVKLGFIGGAKIHSSQASGAPIGTAL-PPGTPSWGRGWKEGMIDWYDH 431

Query: 60  SFNIGSEGSVMANRDNYLDLDPTYRDAYGLPLLRMTFDWKENEIRMTQYVTDRVVEVAKA 119
           S  I    + M+ R ++LDLDP Y+D +G PLLRMTFDW++NE+++ +Y+ D V++++K 
Sbjct: 432 SMKISITTTCMSYRGHFLDLDPNYKDPWGQPLLRMTFDWRQNELKLQRYLRDIVLKISKE 491

Query: 120 MKPKLMHASATKSGEHYDVRPYQTTHTTGGAICGDRPDNSVINKYLQSWDVHNLFIMGAS 179
           + P  M  S      H+D+  Y +TH  GGAI GD P +S +NKYLQSWDVHN+F+ G +
Sbjct: 492 LNPDHMSESFLALDSHWDITKYVSTHNVGGAIMGDSPRDSALNKYLQSWDVHNVFVPGGN 551

Query: 180 AFPQNWAYNPTGMVGALAYWSAAAIRERYLKNPGPLVQA 218
           AFPQN+  NPT  +GA+   +A AI+ +YLKNPGPLVQA
Sbjct: 552 AFPQNFQANPTATIGAITLMAAHAIKTQYLKNPGPLVQA 590


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 764,976
Number of extensions: 31420
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)